Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0958 ATGAGAGGGCCCTACCCAAGGGCATCGGCGACAGTGAGTGTGGACGAGATGGCATTTACTCTGTTACTGTGAACAAATGAAGACGTTACCGATACAAATATTATATTCCAACGCAATTCAGTGCGCTTTCTGAATTCTCCCACACTGTTTCTGCTTTCGCACCGCAAAATGGACATCGACTCCTCATACACCTCCAACTGGCTCTACGATTATGGCTTCGATATTTCTGTTGCCGGAGCTGAATTCCCGGCCGCGGCTTCCGGTGGTTTCAATTGGGTGCCTCAAGCTTTCAAGGATTCTTCCGATATGAGCTTGGACATGGAATGCTCACTGGAGAATTCAACTGCCCTGGAAAATGGCCCATCAAAACGGTTGAAGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAACTGCGAAGGGATAGACTTAATGAGAGGTTCACGGAGTTGAGTGTTATCTTGGAACCTGGGAAGCTGCCCAAGACGGATAAGGCCGCTATATTAAGTGATGCAGCTCGAATGGTAACTGAATTAAGAAGTGAAGCCCAGAAGCTGAAGGAAACAAATGCCGAGTTTCTTGTAAAGGTTAAGGAACTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGATGGATAAAGAAAAGCTTGAGCAACATGTCAAAGTGATGAATGCACAGCCTACCTATCTTTCTCATCCTTCTGCTGCATTTACTGCTCAGGGGCAACCTGCCAACCGCAAGCTAATACCTTTTGTTGGTTATCCTGGAATGGCCATGTGGCAATTTTTGCCACCTGCTGCAGTTGATACATCCCAGGATCATCTTCTTCGCCCTCCTGTGGCGTAA 867 0.4706 MRGPYPRASATVSVDEMAFTLLLXTNEDVTDTNIIFQRNSVRFLNSPTLFLLSHRKMDIDSSYTSNWLYDYGFDISVAGAEFPAAASGGFNWVPQAFKDSSDMSLDMECSLENSTALENGPSKRLKTESCASGSKACREKLRRDRLNERFTELSVILEPGKLPKTDKAAILSDAARMVTELRSEAQKLKETNAEFLVKVKELKAEKNELRDEKNRLKMDKEKLEQHVKVMNAQPTYLSHPSAAFTAQGQPANRKLIPFVGYPGMAMWQFLPPAAVDTSQDHLLRPPVA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0958 288 CDD bHLH_AtILR3_like 135 210 - -
Bisa12g0958 288 Gene3D - 128 194 IPR036638 GO:0046983
Bisa12g0958 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983
Bisa12g0958 288 PANTHER BHLH TRANSCRIPTION FACTOR 62 288 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Bisa12g0958 288 SMART finulus 136 187 IPR011598 GO:0046983
Bisa12g0958 288 Coils Coil 171 233 - -
Bisa12g0958 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Bisa12g0958 288 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0958 Bisa-ChrBisa12 15509316 15512407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0958 61 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.772 7.73e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa12g0958 HLH 4.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0958 12 15509316 15512407 Bisa12g0958 12 15509316 15512407 ECH