Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0847 ATGGTCTTCTCAGGTGGTCGAATTCTGGCGCTTGAGGGAACGCACAGTAAAACAAAAAGAATGGCCTTAGATCAATACTTGGAGGATTATGCTTTCCAATCTGGTCCCTTGGAAGATAAACCTCGTCTGGAAAAGTGGAATTCTGCCTCCAAATCCATTGCAGATGATGATAGGAATGCTTCTAATGGATTTGACTGCAACATCTGCCTTGAGAGTGTGCAAGAACCAGTGGTCACTCTCTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCACTTCCATGCCATCTCTAGCGAAAACGACGAAGAGCACGAAACACCACGCTGCCCAGTATGCAAATCACAAGTGTCTCAATCCTCTTTAGTTCCACTCTATGGCCCAGGGGAAACAACACCTTCGAAAGGACCTTCAAAAGGCAGGTCTCCCTGTGTTGGGACCATCGTACCTAGAAGACCTCTAGGTCCTATGTGTGTTAATGACTCACCAGGATCATTTAATACTCCATCTACTTCCCAATTTTATCAACGACATCATCCTCATCATCATCATCATCATCATCATCATCCTCAACAGCACAATGCATTTGATACAACCATTGGAGTCTTTGGTGAGATGATCTATGCAAGGATGTTTGGTAACCAGTTGACAAACATGTACACTTACCCTAATTATTCGTATAATCTCGCCGGGCAAAGGAACTCGAGGATCAGAAGGCATTTGATGCAAGCAGATAAATCACTCAGCAGAATCTGTTTCTTCCTCCTTTGTTGCACAGTTTTGTGTCTTCTCTTATTCTAG 807 0.4411 MVFSGGRILALEGTHSKTKRMALDQYLEDYAFQSGPLEDKPRLEKWNSASKSIADDDRNASNGFDCNICLESVQEPVVTLCGHLYCWPCIYKWLHFHAISSENDEEHETPRCPVCKSQVSQSSLVPLYGPGETTPSKGPSKGRSPCVGTIVPRRPLGPMCVNDSPGSFNTPSTSQFYQRHHPHHHHHHHHHPQQHNAFDTTIGVFGEMIYARMFGNQLTNMYTYPNYSYNLAGQRNSRIRRHLMQADKSLSRICFFLLCCTVLCLLLF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0847 268 ProSiteProfiles Zinc finger RING-type profile. 66 116 IPR001841 -
Bisa12g0847 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 37 265 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bisa12g0847 268 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Bisa12g0847 268 MobiDBLite consensus disorder prediction 171 194 - -
Bisa12g0847 268 MobiDBLite consensus disorder prediction 178 193 - -
Bisa12g0847 268 Pfam RING-type zinc-finger 66 93 IPR027370 -
Bisa12g0847 268 SMART ring_2 66 115 IPR001841 -
Bisa12g0847 268 SUPERFAMILY RING/U-box 57 122 - -
Bisa12g0847 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 128 IPR013083 -
Bisa12g0847 268 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 49 129 - -
Bisa12g0847 268 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0847 Bisa-ChrBisa12 13757826 13759034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0847 59 268 C3H Transcription Factor Family AT4G28270 40.187 8.34e-47 153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0847 12 13757826 13759034 Bisa12g0847 12 13757826 13759034 ECH