Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0837 ATGGGTTGCATATCATCCAAGACTTCAGCTGTAGAAGACAGTAGAGAAGGTTTGACGGCGAAATTATCGTCATCAAGCAAAAGGACATCGGAGCTTAATGTTTCACGACTGAATTCGTCAAAAAGGGATGAGGGAGTTTGGACAAAAAATGTGTTAGATGGCAGCGATGTGAAAGTTTCATTAATTGGTAAGAAAGCCAGTGGTTCGGTAAGGTTGTATGATGATCAGATTGGGGAGGAGAAAATTGAGAAACCCGAATTAACAGTTCTTAGTGATCCTGGTCTTGGAAAGGTGCCAAAGGCTATAGAAGGAGAGCAAGTTGCTGCGGGATGGCCAGCTTGGCTATCTTCTGTTGCTGGTGAGGCTATCAAGGGATGGATACCCCGGAGTGCTACTACTTTCGAGAGGTTATACAAAATTGGCCAAGGAACATATAGTACAGTCTATAAGGCACGTGATGTGACTAACCAAAAGATTGTTGCTTTGAAGAGAGTGCGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTCATGGCAAGGGAAATTTTTGTTCTACGTAGACTTGACCATCCAAATATAATAAAGTTGGAGGGCTTGATAACATCTCAGACGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGCAACATGATCTTACAGGACTTGCATCACGTCCTGGCATTAAGTTTTCTGAGCCACAGATTAAATGCTACATGCAACAGCTTCTGAATGGATTGGATCATTGTCACAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTTATTGACCATAATGGCATCTTAAAGATTGCAGATTTTGGTTTAGCAAGTTTTTTTGACCCCCATCATAGTGTTCCATTAACTAGTCGAGTGGTGACCCTGTGGTATAGACCCCCAGAACTTTTACTTGGAGCATCTCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGTATACTAGGGGAACTATATTCTGGCAGGCCCATATTGCCAGGAAAAACTGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGTGGCTCACCATCTGAGGATTACTGGCTTAAATTGCGGTTGCCACATTCAACAGTATTCAAGCCTCCCCACCATTATAGACGTTGTATTGCTGAAACATTCAAGGAATATCCATCTGCTGCTGTGACCCTTACAGAGACCCTACTTTCCATAGATCCTGCAAATCGTGGAACAGCGGCTACTGCTTTAAAAAGTGAGTTCTTTACGACGGAACCCCTTGCTTGTGATCCATCAAGTTTACCAAAATACCCTCCTAGCAAAGAGATTGATGCTAAGTTGCGAGATGAAGCATCCAGAAGGCAAGGAGCTGTTGGAGGAAGAGAGCAGAAAGTTGGCGTGGGAGTTAGACCAGAAAAAGAACTTCAGTCACTTGCAGCAAATAACAATGCTGACCCACGCCCATCAATGCAGCAAGGACGTCATTCCAGCTCAAAGAGCCGAAATGAATTGCTCAATCCTCCCAGAGAATCTGCATCAGGGTTGTTGGCTCTTCCACATAACCAGTCAGAAGATAATAAAGAAATGGACATTAATATCTCTGGACATCTTTATAAGAGGCCTTCATATTCTGGTCCATTGATTCAGGGCCCTGGCCCTGGCCCTGGCTGGGCAAAGGTTGGGAAGGGCATGGATGAGCGGCATCTTGGTTCAAACAGAGTCAACCTATCAAAAATATCTGGCTTAGTTGCATCTAGGACATTAGTCTCTAAAGATCAGGAGGAAAAATCACTTTGCTCACAACCCAGAAAAGCAGTTGACATACGAAAATCTGTGGAGTCAATTACTGGATCAGAGTCAAGAAGGCAGGATCAGAAAGGCCAGTCTCAGAGAATTGATATCTGTCATATAGAACATGGAAGAACCCCCACTAAAGAATTAACTCCGGAACGGCGTGCCAGGGGAAACAAGATCTATCTCTCTGGTCCATTACTGGTTTCCTCGAACAACATGGATCAGATGCTTAAAGAGCATGATCGAAAGATCCAGGAATATTCAAGACGAGCTAGAATTGACAAGTCAAGAGGTGAGAAAGTCAGTGCACAGCATCGAAATTAG 2106 0.4368 MGCISSKTSAVEDSREGLTAKLSSSSKRTSELNVSRLNSSKRDEGVWTKNVLDGSDVKVSLIGKKASGSVRLYDDQIGEEKIEKPELTVLSDPGLGKVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSATTFERLYKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIFVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMQHDLTGLASRPGIKFSEPQIKCYMQQLLNGLDHCHSRGVLHRDIKGSNLLIDHNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCIAETFKEYPSAAVTLTETLLSIDPANRGTAATALKSEFFTTEPLACDPSSLPKYPPSKEIDAKLRDEASRRQGAVGGREQKVGVGVRPEKELQSLAANNNADPRPSMQQGRHSSSKSRNELLNPPRESASGLLALPHNQSEDNKEMDINISGHLYKRPSYSGPLIQGPGPGPGWAKVGKGMDERHLGSNRVNLSKISGLVASRTLVSKDQEEKSLCSQPRKAVDIRKSVESITGSESRRQDQKGQSQRIDICHIEHGRTPTKELTPERRARGNKIYLSGPLLVSSNNMDQMLKEHDRKIQEYSRRARIDKSRGEKVSAQHRN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0837 701 CDD STKc_CDK9_like 134 418 - -
Bisa12g0837 701 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Bisa12g0837 701 Gene3D Transferase(Phosphotransferase) domain 1 217 455 - -
Bisa12g0837 701 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Bisa12g0837 701 Coils Coil 664 684 - -
Bisa12g0837 701 MobiDBLite consensus disorder prediction 446 521 - -
Bisa12g0837 701 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Bisa12g0837 701 PANTHER CELL DIVISION PROTEIN KINASE 133 423 - -
Bisa12g0837 701 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Bisa12g0837 701 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0837 701 MobiDBLite consensus disorder prediction 669 701 - -
Bisa12g0837 701 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0837 701 MobiDBLite consensus disorder prediction 472 503 - -
Bisa12g0837 701 Pfam Protein kinase domain 135 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0837 701 SUPERFAMILY Protein kinase-like (PK-like) 129 424 IPR011009 -
Bisa12g0837 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Bisa12g0837 701 MobiDBLite consensus disorder prediction 607 627 - -
Bisa12g0837 701 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0837 Bisa-ChrBisa12 13611049 13619870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0837 126 461 Core Cell Cycle Gene Families AT5G10270 49.432 1.94e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Bisa12g0837 Pkinase 9.4e-67 CL0016