Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0816 ATGTCACTGCACGCTCTCAAGGAAACACTCAAGCCTTGCACAAGCCAGCCATCCTCTACATCGATTGCCCAAACGCAGTCCTCGATTTTCCGTGATTCCAACATCGCAATCCCGAGGAAACCCCCAAAATCCTCTCTTACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTGGCCCCCCAATTCAGCCGCACAATTCACATAAACGAGAAAGAGAACAGAGTGGTGAGGTCGAGGACGAGGAAGAGGAAGACGACAGGGGGGATGAAGAGGAGGAGCCAGAGCTGAAGTGGGCAAAATTCCATGGAGCTAAAGTGTGTCAGTTTCAGTTTGATCATACAGGACCCTTTGAGCCTCTGATCTTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTGCATCTATCAACTGTAGACTACTTGAACATCAAAGAGTAGGAGTGAAGTTTCTCTATAGTTTGTATAGGAACAATCACGGAGGCATTCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATAGGCCAAAGGAACACCAAACAGTGAAAAGAGGTCCTGTATTAATAATTTGCCCAACTTCTGTTATCCATAACTGGGAGAATGAGTTCTCTAATTGGGCAAACTTTAGTGTTTCCATTTATCATGGTACAAACCGGGATCTAATATATGATAAATTGGAAGCACATGGAGTAGAGATACTTATTACCAGTTTTGACACATACAGAATTCATGGTAGCACCTTGTCGAAAATCAAATGGGACGTTGTGGTTATTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTATAGAGCATGCTTAGAAATAAAAACCCAGAGACGATTTGGTCTTACAGGTACCATAATGCAAAATAAGATCATGGAATTGTTTAATCTCTTTGACTGGGTTGCACCAGGATCTCTAGGAACACGGGAACACTTTAGAGATTTCTATGATGAACCCCTCAAGCATGGCCAGAGGTCAACTGCTCCTGAGAGGTTTGTCCAAATTGCCAATGAGCGAAAACAACATCTTGTGACAGTTCTTCATAAATATTTGTTAAGAAGGACGAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAATGTTGTGTTCTGCACCATGAGTGAATTACAAAAACGGGCATATGGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATAAATAAGGACTTGCCATGTAGTTGTGGAAGCCCACTCACTCAAGTTGAATGTTGTAAGAGGATTGTATCAGATGGAATTATTTGGTCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTCCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCCGACAAACAAAGAAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAACATGCAGAATGAAAGTTTCATGGGTCTAAGTGACGTCCAGCATTGTGGCAAAATGAGAGCGCTTGAGAAGCTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCGAGACTTGATGGATCCACTCCAACTAATTTACGTCAGTCTCTTGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTGTTTCTGATATCAACTCGAGCGGGCGGACTTGGATTGAACCTTGTCAGTGCCAATCGCGTGGTTATATTTGATCCCAATTGGAATCCTGCTCAAGACTTACAGGCACAGGACAGGTCCTTCCGTTTTGGGCAAAAGCGGCATGTTGTGGTATTCCGACTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTCTATTCTCGTCAGGTGTACAAGCAGCAATTATCAAACATTGCTGTCTCTGGAAAAATGGAAAAACGATACTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATCTATTTCGAGATTTATCTGATAAGCTGTTTACCAGTGAAATAATTCATTTGCAAGAAGAGAGAAAAGAACATGGTCATAGAACAGAGGATGAGAAAAAAATTGCTCCCTTGGAAAACGCTGATATATTATCAGAGTCTGTGAACAGGTTATGTGCGGAATCTGGGAGGATTTTAACGAGTAAAGCAGATCTCAAAGACCTTGGCATTGTCTATGCTCATCGCTATGAAGACATTGTCAACTTTGGTCCTAGGATTCAAGGGATAGATATCAACATCTCTCAGTGTGATAGCCTAAACATTCCACGCATCCCCGGTGTTCAGAGAGAGAAATGTGTGGGTAAAAAACAGAAAGTTCCTCTCATCAATGGGAGGAAGAGAACCCAATATAGCCTGCTTGCTCAGTCTATGGGAATGGGAGAGCTTGAATTTAGCAGGTGGCTATTATCAGTGACTCCAATGGAAAGAGAGAAGGTGCTTCAGGACTACAAGAAGAGGAAGAAGATACCTAAAGGCTGA 2628 0.4288 MSLHALKETLKPCTSQPSSTSIAQTQSSIFRDSNIAIPRKPPKSSLTQQLRRLQDPLAGPPIQPHNSHKREREQSGEVEDEEEEDDRGDEEEEPELKWAKFHGAKVCQFQFDHTGPFEPLILSSDGEVPVVQVPASINCRLLEHQRVGVKFLYSLYRNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYRPKEHQTVKRGPVLIICPTSVIHNWENEFSNWANFSVSIYHGTNRDLIYDKLEAHGVEILITSFDTYRIHGSTLSKIKWDVVVIDEAHRLKNEKSKLYRACLEIKTQRRFGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFRDFYDEPLKHGQRSTAPERFVQIANERKQHLVTVLHKYLLRRTKEETIGHLMMGKEDNVVFCTMSELQKRAYGRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSDGIIWSYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQRKDAEFAAAVFGPDIDLVGGNMQNESFMGLSDVQHCGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIHLQEERKEHGHRTEDEKKIAPLENADILSESVNRLCAESGRILTSKADLKDLGIVYAHRYEDIVNFGPRIQGIDINISQCDSLNIPRIPGVQREKCVGKKQKVPLINGRKRTQYSLLAQSMGMGELEFSRWLLSVTPMEREKVLQDYKKRKKIPKG 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0816 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 686 IPR001650 -
Bisa12g0816 875 SMART ultradead3 137 332 IPR014001 -
Bisa12g0816 875 Gene3D - 120 373 IPR038718 -
Bisa12g0816 875 Pfam Helicase conserved C-terminal domain 530 642 IPR001650 -
Bisa12g0816 875 Pfam SNF2-related domain 158 414 IPR000330 GO:0005524|GO:0140658
Bisa12g0816 875 CDD SF2_C_SNF 527 653 - -
Bisa12g0816 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 324 IPR014001 -
Bisa12g0816 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 695 IPR027417 -
Bisa12g0816 875 SMART helicmild6 559 642 IPR001650 -
Bisa12g0816 875 PANTHER SNF2/RAD54 FAMILY MEMBER 16 800 - -
Bisa12g0816 875 MobiDBLite consensus disorder prediction 77 92 - -
Bisa12g0816 875 Gene3D - 386 748 IPR027417 -
Bisa12g0816 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 374 IPR027417 -
Bisa12g0816 875 FunFam Switch 2 123 373 - -
Bisa12g0816 875 MobiDBLite consensus disorder prediction 9 33 - -
Bisa12g0816 875 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0816 Bisa-ChrBisa12 13037662 13057442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0816 161 672 RAD5 or RAD16-like Gene Family AT1G02670 24.955 2.35e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa12g0816 SNF2_N 2.6e-55 CL0023