Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0804 ATGAAGGTTCTGTTAGATCTTCGGGTTCTTGTTTGTGAATATGGCTGGGAGGCAACATTAGTTGTTGTTGTTGTTAAATGGTTATTTGCTGTGATGATTTCTGTTATTAGTTCTACCAAGAGAAACATGATAATGAAATATGTACTTGACAGGAATACTTGTGTTGTTCACAAGAATGTGACTTGCAGCCCACTGGGCAGCATCAGGATCAACCTGTTTGATGGGCCTGACGTTATCTGGTTCACTGCAATATATGGGCCTGGACCAAATTCTAAGGCGAGACTTTTGGGGTTTCTATATAATATAGCAATGAGCAGCGTCTGTGCTGAGCAGCACAAGTTCCTTCCCTTTTCCCCTAAGAAGTCTCTGATTAGAGACATTGACATCCCTCCCAGGAAGCTTCTCAGTCGTCGTTCCTCCGCCGCAGCGCACGACGGGGTTGAGATGTACTCGGACTCCCCTAGATTCTCCTCCTGGGAGGAGGCGTTTCTCCACAAATTCCTTCCCCACAATATGGACTCCGACGACGACGACTCTGATCCCTACTCCTCCGACCACTTCCGCATGTACGAGTTCAAGGTCCGGCGGTGCACCCGCAGCCGCAGCCACGACTGGACCGACTGCCCCTTCGCTCACCCCGGCGAGAAGGCCCGCCGTCGCGACCCTCGGAAATTCCACTACTCCGGCACCGTCTGCCCAGAGTACCGCCGCGGTGGGTGCAGCCGCGGCGACTCCTGTGAGTTCGCACACGGGGTGTTTGAGTGTTGGCTTCACCCAGCGAGGTACAGAACCGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGAAAGGTCTGCTTCTTCGCTCACACTCCTCGCCAGCTGAGGATTCTCCCGGTTAATTCTCATTCCCACAATTCTTCGATTGATAATCACATTTCCTGCAAGAACAACACCAATAAATTCTTGGGATCGAACAATTGCTGCTTGTTCTGTCATCATTGCGCTACTGCTGCTGTTAATGCTACTCCCTCTCCAACCTCCACTCTATTTGGGATGTCCCATATGTCTCCGCCACTCTCGCCTTCGTCGTCCCCTGTTTCGCCGCCGCTTTCTCCGGTGAAGCGCCGGTCTACTGCAAATGGGGTGTCGCCAATTTCTCGATATTGTGACAGGTTTGCAGGATGTGAGTCGTCCTCTGGTGGCTTGATGAACAATCATGAGGTGGTTAGCTATATAGATGTGCTCACTGAGTTGATGAGCTCCCTCGAGGGTCTGAATTTCATTGAAGCTAATTCTTCAGCTTCACCTGTTTCTGCTGCAAAACCGCGAAATCTGCCATGGCTTGATGTTTCTTTGATCAACTCTGAAGCTCAGCAGCAACAGTTCATTCTTTCACCTGCTACTTCTTTCGGTTCTGAAGATCAACAGCAGCAGTTCATTCTTTCACCATCTCCTCATACCCCAACAACAACCTCCTCTGCTTCTGCAAGCTTCTCTAATGGGAAATTATATTCAAGCAGCAAAATCTTCAGCGATGAGAGCAGGGTCAGTGTTTCAAATGATAACGGGTCCTCCTGCTCAGCTCCAGATCTCGGGTGGGTCAATGAGTTGCTGATGTAG 1599 0.4991 MKVLLDLRVLVCEYGWEATLVVVVVKWLFAVMISVISSTKRNMIMKYVLDRNTCVVHKNVTCSPLGSIRINLFDGPDVIWFTAIYGPGPNSKARLLGFLYNIAMSSVCAEQHKFLPFSPKKSLIRDIDIPPRKLLSRRSSAAAHDGVEMYSDSPRFSSWEEAFLHKFLPHNMDSDDDDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRKFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSHSHNSSIDNHISCKNNTNKFLGSNNCCLFCHHCATAAVNATPSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRSTANGVSPISRYCDRFAGCESSSGGLMNNHEVVSYIDVLTELMSSLEGLNFIEANSSASPVSAAKPRNLPWLDVSLINSEAQQQQFILSPATSFGSEDQQQQFILSPSPHTPTTTSSASASFSNGKLYSSSKIFSDESRVSVSNDNGSSCSAPDLGWVNELLM 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0804 532 SMART c3hfinal6 226 252 IPR000571 GO:0046872
Bisa12g0804 532 SMART c3hfinal6 261 284 IPR000571 GO:0046872
Bisa12g0804 532 MobiDBLite consensus disorder prediction 468 492 - -
Bisa12g0804 532 ProSiteProfiles Zinc finger C3H1-type profile. 227 253 IPR000571 GO:0046872
Bisa12g0804 532 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 251 IPR000571 GO:0046872
Bisa12g0804 532 PANTHER UNKEMPT FAMILY MEMBER 154 531 IPR045234 -
Bisa12g0804 532 Gene3D - 226 290 - -
Bisa12g0804 532 MobiDBLite consensus disorder prediction 347 371 - -
Bisa12g0804 532 FunFam Zinc finger CCCH domain-containing protein 66 184 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0804 Bisa-ChrBisa12 12904542 12911573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0804 176 290 C2H2 Transcription Factor Family AT5G12850 65.217 1.02e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa12g0804 zf-CCCH 1.6e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0804 12 12904542 12911573 Bisa12g0804 12 12904542 12911573 ECH