Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa12g0791 | ATGCTCGCGGTTTCACCGTTGAGGAGCGCGAAAGATGAAGAGCAAGGAGAGATGGAGAGGTTTTCCATGGAAACCCATGAATTTGCTGATATTTCTGACGGGAGTTTATTGGAAAGCATCAATTTTGATGATATTTTCGTGGGGATCCACGACGGCGATGTCTTGCCGGACTTGGAGATGGACCCCGAGATCTTCGCCGACTTCTCCATCGGCTGCGACGACTCCGAGATGGTCTCCTCGTCGGTCTCGGTGGAGAATATGAATAATAGTAATAATAACAATAAAGTTGATCAGATTGACGTTGACCAGAGTCACTTAACGTCGACGAAGAAAGAGGAAGCCGATAAAGTTTCTTGGGGTTCGAACAATGGTGGGTCTAGCCCCTCGGAGATAGTGAGCAAAAGAGCTGAGTCTGATCAGTCCGTGGTGATGAATCCGACGTCGTCGCAGAAGGAAGGTGACAAGGGAAGAAAATCATCGGCTCAGTCCAAGAATTCTCAGGGAAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTACACAGACGATTCGTGCAAGCAGTGGAGCAACTAGGGGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATCGCCAGCCATCTTCAAAAATATCGATCTCACCGGAAGCATCTGCTAGCACGAGAAGCAGAAGCAGCGAAGTGGAGTAAGAGAAGGCAATCGTATGGTGTAGTAGGAGGAGGAGGGAAGAGAGACGCGAGCCCATGGGTGGCAGCAGCACCGGCACCCACCGTGGGCTTCCCTCCCATGACGCCGCCGATGCATCATTTCAGACCCTTACACGTATGGGGCCATCCCAGCCCCACCCTGGACCACTCCTTCATCCACTTGTGGCCTAAGCATCTACCGCTACACTCCCCGTTGCCGTCGCCGTCCCTCGCATGGGCGCTGCCCACGGCTCCGCCTACTCCGCCACCGGCTCCCGACCCTCCATATTGGCAACAGCGGAGATCATTTGGCTCTCCACCTGTGCCGGGTATCCCACCCCATGCCATGTACAAAGCAGATCCCGGCATCGGCGTCCTCACTGGCCACCTGGCCGGCTCCCGGCCGCCCCTTGACTTTCATCCCTCAAAAGAGAGTATAGATGCAGCTATTGAAGACGTTTTATCAAAGCCGTGGCTGCCACTGCCTCTTGGGCTCAAAGCTCCAGCACATGACAGTGTGATGGGTGAACTACAGAGACAAGGAATTCCCAGAATTCCACCCTCTTGTGCTTGA | 1293 | 0.5313 | MLAVSPLRSAKDEEQGEMERFSMETHEFADISDGSLLESINFDDIFVGIHDGDVLPDLEMDPEIFADFSIGCDDSEMVSSSVSVENMNNSNNNNKVDQIDVDQSHLTSTKKEEADKVSWGSNNGGSSPSEIVSKRAESDQSVVMNPTSSQKEGDKGRKSSAQSKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAAKWSKRRQSYGVVGGGGKRDASPWVAAAPAPTVGFPPMTPPMHHFRPLHVWGHPSPTLDHSFIHLWPKHLPLHSPLPSPSLAWALPTAPPTPPPAPDPPYWQQRRSFGSPPVPGIPPHAMYKADPGIGVLTGHLAGSRPPLDFHPSKESIDAAIEDVLSKPWLPLPLGLKAPAHDSVMGELQRQGIPRIPPSCA | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa12g0791 | 430 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 171 | 225 | IPR006447 | GO:0003677 | |
| Bisa12g0791 | 430 | MobiDBLite | consensus disorder prediction | 79 | 174 | - | - | |
| Bisa12g0791 | 430 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Bisa12g0791 | 430 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 168 | 227 | IPR017930 | - | |
| Bisa12g0791 | 430 | SUPERFAMILY | Homeodomain-like | 169 | 228 | IPR009057 | - | |
| Bisa12g0791 | 430 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 1 | 429 | IPR044825 | GO:0003700|GO:0045893 | |
| Bisa12g0791 | 430 | MobiDBLite | consensus disorder prediction | 79 | 103 | - | - | |
| Bisa12g0791 | 430 | FunFam | Two-component response regulator | 167 | 230 | - | - | |
| Bisa12g0791 | 430 | Gene3D | - | 168 | 229 | - | - | |
| Bisa12g0791 | 430 | MobiDBLite | consensus disorder prediction | 119 | 150 | - | - | |
| Bisa12g0791 | 430 | Pfam | Myb-like DNA-binding domain | 174 | 223 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa12g0791 | Bisa-ChrBisa12 | 12703690 | 12708316 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa12g0791 | 1 | 381 | G2-like Transcription Factor Family | AT5G44190 | 39.494 | 2.71e-61 | 201 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | GARP-G2-like | Bisa12g0791 | Myb_DNA-binding | 5.5e-08 | CL0123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bisa12g0791 | 12 | 12703690 | 12708316 | Bisa12g0791 | 12 | 12703690 | 12708316 | ECH |