Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0704 ATGTTGATTTCTGGCTTATTGGATAACGTTAAGTTGAGATCTGCTCGTGCAAGAAGCCAACAACAGTTACGACCGCGCGGCGAAGAGGGAAAATGCGACATAGGGCCTACTCAGCATTGTTGGCTTGAGCTATGGTGTTGGGCTGAGCTCACCTTAGTCTTTGGGCTAACGAGAAAACATCTGCATTTTCTGGTAATCAGCAATCGCAACCTCTCTAGCCCTGTTATATTTATATTTCATCTCGAGATGCAAATCTTTGTGAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAAAGTTCCGATACCATAGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAACAGAGGCTTATCTTCGCCGGTAAGCAGCTGGAGGATGGTCGAACCCTTGCTGACTACAATATTCAGAAGGAATCAACCCTCCATCTAGTGCTGCGTCTCAGGGGTGGGATGCAGATCTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTTGAGAGCTCCGATACAATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATTCCACCAGACCAGCAAAGGCTGATCTTTGCCGGTAAGCAACTCGAGGATGGTCGCACCCTTGCTGACTATAACATCCAAAAGGAATCGACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGCATGCAAATTTTCGTCAAGACCTTGACTGGGAAAACTATCACCCTTGAGGTGGAATCATCCGATACAATTGACAATGTTAAAGCGAAGATTCAGGACAAAGAGGGCATCCCGCCAGATCAGCAGAGGTTGATTTTTGCGGGTAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTTCGTTTGAGAGGTGGAATGCAAATTTTCGTCAAGACATTAACTGGGAAAACCATAACCTTGGAAGTTGAAAGTTCTGATACCATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAGCTGGAAGATGGACGTACTCTTGCCGATTATAATATTCAAAAGGAATCCACTCTGCACTTGGTTTTGCGACTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTGACGGGGAAGACCATAACTTTGGAGGTTGAAAGTTCCGATACTATTGATAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATCCCGCCTGATCAGCAGAGGCTTATCTTCGCTGGGAAGCAGCTGGAAGATGGACGTACCCTTGCTGATTATAATATTCAAAAGGAATCCACTCTGCACTTGGTCTTGCGCCTTCGCGGTGGCATGCAAATTTTTGTGAAAACTCTGACTGGGAAGACTATAACCTTGGAGGTAGAAAGTTCGGATACTATTGATAATGTTAAAGCAAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAACAGCGCCTTATTTTTGCTGGGAAGCAACTGGAAGATGGTCGAACTTTGGCTGATTACAATATTCAGAAAGAATCCACACTCCACCTTGTCCTCCGCCTTCGCGGTGGCTTCTAA 1620 0.4623 MLISGLLDNVKLRSARARSQQQLRPRGEEGKCDIGPTQHCWLELWCWAELTLVFGLTRKHLHFLVISNRNLSSPVIFIFHLEMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 337 362 IPR019954 -
Bisa12g0704 539 CDD Ubl_ubiquitin 159 234 - -
Bisa12g0704 539 FunFam Polyubiquitin 3 387 462 - -
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 109 134 IPR019954 -
Bisa12g0704 539 FunFam Polyubiquitin 3 159 234 - -
Bisa12g0704 539 PRINTS Ubiquitin signature 135 156 IPR019956 -
Bisa12g0704 539 PRINTS Ubiquitin signature 114 134 IPR019956 -
Bisa12g0704 539 PRINTS Ubiquitin signature 93 113 IPR019956 -
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 385 462 IPR029071 -
Bisa12g0704 539 CDD Ubl_ubiquitin 311 386 - -
Bisa12g0704 539 FunFam Polyubiquitin 3 311 386 - -
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 489 514 IPR019954 -
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 78 158 IPR029071 -
Bisa12g0704 539 CDD Ubl_ubiquitin 463 538 - -
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 261 286 IPR019954 -
Bisa12g0704 539 FunFam Polyubiquitin 3 235 310 - -
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 461 538 IPR029071 -
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 158 234 IPR029071 -
Bisa12g0704 539 CDD Ubl_ubiquitin 83 158 - -
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 463 538 IPR000626 GO:0005515
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 387 462 IPR000626 GO:0005515
Bisa12g0704 539 CDD Ubl_ubiquitin 235 310 - -
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 413 438 IPR019954 -
Bisa12g0704 539 Gene3D - 463 539 - -
Bisa12g0704 539 Gene3D - 235 310 - -
Bisa12g0704 539 Gene3D - 387 462 - -
Bisa12g0704 539 Gene3D - 79 158 - -
Bisa12g0704 539 Gene3D - 159 234 - -
Bisa12g0704 539 Gene3D - 311 386 - -
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 159 234 IPR000626 GO:0005515
Bisa12g0704 539 CDD Ubl_ubiquitin 387 462 - -
Bisa12g0704 539 ProSitePatterns Ubiquitin domain signature. 185 210 IPR019954 -
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 83 158 IPR000626 GO:0005515
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 234 310 IPR029071 -
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 311 386 IPR000626 GO:0005515
Bisa12g0704 539 SUPERFAMILY Ubiquitin-like 310 386 IPR029071 -
Bisa12g0704 539 ProSiteProfiles Ubiquitin domain profile. 235 310 IPR000626 GO:0005515
Bisa12g0704 539 FunFam Polyubiquitin 3 83 158 - -
Bisa12g0704 539 Pfam Ubiquitin family 161 232 IPR000626 GO:0005515
Bisa12g0704 539 Pfam Ubiquitin family 237 308 IPR000626 GO:0005515
Bisa12g0704 539 Pfam Ubiquitin family 389 460 IPR000626 GO:0005515
Bisa12g0704 539 Pfam Ubiquitin family 85 156 IPR000626 GO:0005515
Bisa12g0704 539 Pfam Ubiquitin family 313 384 IPR000626 GO:0005515
Bisa12g0704 539 Pfam Ubiquitin family 465 536 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 83 154 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 387 458 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 463 534 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 159 230 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 235 306 IPR000626 GO:0005515
Bisa12g0704 539 SMART ubq_7 311 382 IPR000626 GO:0005515
Bisa12g0704 539 PANTHER UBIQUITIN 159 238 - -
Bisa12g0704 539 FunFam Polyubiquitin 3 463 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0704 Bisa-ChrBisa12 11142871 11148700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0704 463 539 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.63e-46 155