Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0688 ATGCCAACGGTTTGGTTCTCTCTGAAGAGGTCTCTACACTGCAAATCAGAGCCGTCGGAAGTTCATGACCCCAAATCCAGAAAGCAGCTGAGCACAATCTCAACGAAAAGGGCAGGGAGGTCTGGGTGTTCCAGGAGCATAGCCAATCTCAAAGATGTGATACATGGAAGCAAGAGGCATCTAGAGAAACCACCAAGTTGCAGCCCGAGATCCATAGGTAGCAGTGAGTTTCTCAACCCCATAACCCATGAAGTCATTCTCAGTAACTCCAGGTGTGAGCTTAAAATCACCGGCTTTGGAGGGTTCCAAGAAGGCGCTGCCGCCGGCGGCGGCGGAGGAGGAGGTAATAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCAACCTTTGTCGGTACTTTAAGGCCTGGGACTCCTGGGCCAGGAGGGCACCCTACAATGCATTACTTTAACCCCTCCTTTAGGACATCGTCCACTCCCCCAAGGAAGTCTCCGAGTCCTTTCCTTTTATCAGAAAAAGATGGGTCTGCTTTGCATGGTGGCACTGGTGGGCTTCATTCTAGCAATAGGTTATTTCTTGAGACAGATTCTAATGGCTGTTCCACTGTGACTTGTCATAAATGTGGCGAGCAATTTAGCAAATGGGAAGCTGCAGAAACTCATCATCTCTCCAAGCACGCTGTTACTGAACTCGTGGAAGGCGATTCATCAAGGAAGATAGTGGAGATAATATGCAGAACGAGCTGGTTGAATTCTGATAATCAGTGTGGGAGGATAGAGAGAGTTTTGAAAGTGCACAACATGCAAAAGACATTAGCTCGATTCGAAGAATACAGAGAAATGGTGAAGATCAAGGCCAGCAAGCTCCAGAAGAAGCACCCTCGGTGTCTGGCTGATGGGAACGAGCTTTTGAGGTTCTATGGCACCACAGTGTCGTGCTCTCTGGGCCTCAATGGCTCTTCCAGCCTCTGCCTCTCAGAGAAATGCTGTGTGTGTCGAATTATCAGAAATGGGTTCTCTGCGAAGAAGGAGCTCAAGGGTGGGATTGGGGTGTTTACTACTTCCACGAGTGGAAGAGCCTTTGAATCGATTGAGAGTGTAGAGGATGACCCTTCAATCAGAAAAGCACTCATAGTTTGCAGAGTGATAGCTGGGAGGGTTCATAGGCCTCTGGAGAACATTCAGGAGATGGCAGGGCAAACAGGGTTTGATTCTTTGGCTGGCAAAGTGGGTCTCTATTCCAACATTGAAGAGCTTTATTTGCTCAATCCTAAAGCTCTTCTTCCTTGCTTTGTGGACATTGATGAAGCTGCTTTGGATATTTCAAAATTTGAAGCCATTTGGGAATTTGAACTTGAAAGGGCCTTGGTGGGTGGTGCTTCTAATTAA 1398 0.4814 MPTVWFSLKRSLHCKSEPSEVHDPKSRKQLSTISTKRAGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFGGFQEGAAAGGGGGGGNNGGGGGGGGGGGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPSPFLLSEKDGSALHGGTGGLHSSNRLFLETDSNGCSTVTCHKCGEQFSKWEAAETHHLSKHAVTELVEGDSSRKIVEIICRTSWLNSDNQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIESVEDDPSIRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPKALLPCFVDIDEAALDISKFEAIWEFELERALVGGASN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0688 465 MobiDBLite consensus disorder prediction 118 185 - -
Bisa12g0688 465 SUPERFAMILY ADP-ribosylation 231 438 - -
Bisa12g0688 465 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 437 - -
Bisa12g0688 465 ProSitePatterns Zinc finger C2H2 type domain signature. 208 229 IPR013087 -
Bisa12g0688 465 MobiDBLite consensus disorder prediction 16 41 - -
Bisa12g0688 465 MobiDBLite consensus disorder prediction 16 30 - -
Bisa12g0688 465 Gene3D - 221 436 - -
Bisa12g0688 465 FunFam C2H2-like zinc finger protein 230 439 - -
Bisa12g0688 465 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0688 Bisa-ChrBisa12 10892170 10897171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0688 1 437 C2H2 Transcription Factor Family AT5G54630 66.667 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g0688 None None None