LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0645	ATGATAAGCCATATTCTTCATTTGCAAGATCATGTTGCAAACCATAATCATGGGAACTTAAACAAGAAATTAATGGTAGGAATTGGAGTTGGCTCTTCATTATTAGTGATGGTCTCGGTAACTCTCTGGCTTTCAAGAGATATATGGAAAAAGAAACTTCGAACAACAGGGATGGCAAGAATAATTTACTTGAAGCTTTCTAAGAGAAAACTGAGGAAAGAAGACATGGATCTGCCAACATTTGATTTTTTAATCATAACTGAAGCTACTGATAATTTTTCAGTCAATAATAAATTGGGAGAAGGTGGATTTGGACTAGTTTACAAGGGTACTTTGGCAAATGGGCAAGAGTTAGCTGTAAAAAGGTTATCCAAGAAATCATGTCAAGGATTGGTAGAGTTTAAAAATGAAGTTGTGTTGATCGCCAAACTTCAACACCGTAATCTTGTGAAGCTTCTAGGTTGCTGCATTCAAGGAGAGGAAAAAATGCTGATCTATGAATACATGCCTAACAAGAGCTTGGATTACTTTATTTTCGGTAAAACTAGAAGCAAGCTCTTGGATTGGCTCAAGCGTTTCCAGATTATTGTCGGCATTGCTCGAGGGCTCCTATATCTTCATCAAGATTCTCGATTGAGAATTATTCATAGAGATCTCAAAGCCAGCAATGTTCTACTAGATGCCCATATGAATCCAAAAGTTTCAGACTTTGGCCTAGCTCGAGCTTTTGGGGAAGATCAAGTTGAAGGAAATACTAATAGAGTTGTTGGAACATATGGTTACATGGCTCCTGAATATGTTGTGCATGGGCATTTCTCAGTAAAATCTGATGTGTTTAGTTTTGGCGTAATAATATTAGAGATAATTAGTGGAATGAAGAATAGGGAATTTTCTGACCCAGAAGACAACCTTAATCTTCTTGGATATGCATGGAGACTTTGGACTGAAGAGAGACCATTGGAAATTATAGATAAATTCATAGGTGAAAGATACATTGCTTCTGAAGTCATACGATGCATACATGTGGGATTGCTATGCGTACAACAAAAACCAAAAGACAGGCCAGACATGTCTTCGGTGGTTTTGATGTTGAATGGTGAGAAGTTGTTGCCAAAGCCAAAGGCCCCTGGATTTTACACTGGAAGGGATTTATCTGAGGCAGATTCTTCATCTAGAAATTGCAATCAATTTTCCCCAAATGAGATGTCCCTTAGTGTGCTAGAAGCAAGATAG	1233	0.3779	MISHILHLQDHVANHNHGNLNKKLMVGIGVGSSLLVMVSVTLWLSRDIWKKKLRTTGMARIIYLKLSKRKLRKEDMDLPTFDFLIITEATDNFSVNNKLGEGGFGLVYKGTLANGQELAVKRLSKKSCQGLVEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDYFIFGKTRSKLLDWLKRFQIIVGIARGLLYLHQDSRLRIIHRDLKASNVLLDAHMNPKVSDFGLARAFGEDQVEGNTNRVVGTYGYMAPEYVVHGHFSVKSDVFSFGVIILEIISGMKNREFSDPEDNLNLLGYAWRLWTEERPLEIIDKFIGERYIASEVIRCIHVGLLCVQQKPKDRPDMSSVVLMLNGEKLLPKPKAPGFYTGRDLSEADSSSRNCNQFSPNEMSLSVLEAR	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0645	410	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	169	372	-	-
	Bisa12g0645	410	Gene3D	Phosphorylase Kinase; domain 1	67	168	-	-
	Bisa12g0645	410	Pfam	Domain of unknown function (DUF3403)	370	410	IPR021820	GO:0004674
	Bisa12g0645	410	CDD	STKc_IRAK	99	366	-	-
	Bisa12g0645	410	Gene3D	Transferase(Phosphotransferase) domain 1	169	371	-	-
	Bisa12g0645	410	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	58	168	-	-
	Bisa12g0645	410	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	214	226	IPR008271	GO:0004672\|GO:0006468
	Bisa12g0645	410	SMART	serkin_6	93	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0645	410	ProSiteProfiles	Protein kinase domain profile.	93	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0645	410	Pfam	Protein tyrosine and serine/threonine kinase	95	362	IPR001245	GO:0004672\|GO:0006468
	Bisa12g0645	410	ProSitePatterns	Protein kinases ATP-binding region signature.	99	121	IPR017441	GO:0005524
	Bisa12g0645	410	SUPERFAMILY	Protein kinase-like (PK-like)	76	380	IPR011009	-
	Bisa12g0645	410	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	21	410	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0645	Bisa-ChrBisa12	9626163	9627879	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0645	9	379	Receptor kinase-like Gene Family	AT4G23190	50.789	9.85e-136	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa12g0645		PK_Tyr_Ser-Thr	7.9e-48	CL0016