Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0628 ATGGCCACCGCAGGGCAAGAGAGATCACGTGGATGGCGCATGCAGGACAGCCACACAACAGATGAAGACGAATCAGACTGCTACGTTACAGAGAGCTTGGACGACGAGGACGACGGTGCTGATGAAGAGAAAAAAGAAGACGACGACGGAAGAGACGAAGAGGGCAAGGTGGCGTGGTGGCGGCGAAGAGGAAACGGAGCCAGAAGGTGCGGGTATGGGGGGAAGGTGGTGGACCCGAGGGCGCGATGGGTTCAAGAATGGAACAGGGTGTTCCTTCTGGTGTGCGCCACGGGGCTGTTCGTCGACCCACTCTTCTTCTACGCCCTCTCCATAAGCGACACCTGTATGTGTCTCTTCGTCGATGGGTGGTTCGCCGTCACCGTCACCGTCCTCCGCTGCATGACCGACGCCTTGCACCTCTGGAACATGTGGCTCCACTTCAGGATGGCCAACCGCCCCTTCGCCATGGCTCCTCCTGGCTCCGCCCTAACCCCCATCACCACCCCTCGCTCCGCCGCTCTCCGCTATCTCAGGGCCAAGAGGGGCTTCTTCTTCGACCTCTTCGTCATTCTCCCTCTTCCCCAGATTGTGTTATGGGTTGTAATCCCCTCTCTGTTGGAGAGAGGTTCAGTAACATTGGTGATGACAGTGTTGTTAATAATGTTCCTATTCCAATATCTTCCAAAGATATATCACTCTGTTTGCCTTTTGCGTCGCATGCAAAACGTATCTGGCTATATTTTTGGGACAGTTTGGTGGGGTATTGCCCTTAACATGATAGCCTATTTCGTCGCCTCCCATGCAGCAGGGGCGTGCTGGTATTTACTGGGAATCCAAAGGGCAGCAAAGTGCCTAAAAGATCAGTGTTCCAAAACAAATGGTTGTGGCCTTCGAATACTCTCATGCAAGCAGCCCATATACTATGGAACCAATGGGATGGTGAAGGACGCTGCCCGATTGGCCTGGGCTCACAACAGGCAAGTCAGGTCCACCTGCTTGGACACCCCTGACAACTTTGACTATGGAGCTTACAAATGGACTGTTCAGCTCGTCACCAACGATAGCCGCTTGGAAAAGATCCTCTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACGACCGAGTGGCTAGAAGTTGTTTTCAACATCATTGTTTTGACCAGTGGCCTCCTTCTTGTTACGATGTTGATTGGAAACATCAAGGTGTTTCTGCACGCGACGACATCGAAGAAGCAGGCGATGCAATTGAAGATGAGGAACATAGAATGGTGGATGAGGAAGAGACACTTGCCTGGAGGGTTCAGGCAGCGAGTGAGGAACTACGAACGTCAACGATGGGCTGCCATGCGTGGCGTTGACGAGTTTGAGATGATCAGAAATTTGCCTGAGGGCCTCCGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTCCGACAGGTGCCATTATTTCAGCATATGGATGAATTGGTGCTGGAGAATATCTGCGACCGCGTGAAGTCGCTCATATTCACAAAGGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAAAGAATGCTATTCGTAGTGAGGGGGCACCTTCAGAGCAGCCAAGTGCTGCGAGACGGCGTGAAAAGCTGCTGCATGTTAGGTCCCGGCAACTTCAGCGGCGACGAGCTGCTCTCGTGGTGTCTGAGGAGGCCCTTCATAGAACGCCTTCCTCCGTCGTCGTCCACCCTTATAACCCTCGAAACGACAGAGGCGTTCGGGCTGGAGGCCGACGACGTCAAGTACGTGACGCAGCACTTCAGGTACACCTTCATGAACGACAAGGTGAAGAGAAGCGCCAGGTATTACTCGCCGGGATGGAGAACCTGGGCTGCCGTTGCTATCCAGTTGGCGTGGAGGAGGTATAAGCACCGTTTGACTCTGACGTCATTGTCGTTTATAAGGCCTCGCAGGCCCGTTTCCCGATGCTCTTCCCTTGGGGAGGACCGCCTTCGCCTCTACACCGCCTTGTTGACTTCACCCAAGCCCAATGCAGATGATTATGACTTTTAG 2064 0.5329 MATAGQERSRGWRMQDSHTTDEDESDCYVTESLDDEDDGADEEKKEDDDGRDEEGKVAWWRRRGNGARRCGYGGKVVDPRARWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDGWFAVTVTVLRCMTDALHLWNMWLHFRMANRPFAMAPPGSALTPITTPRSAALRYLRAKRGFFFDLFVILPLPQIVLWVVIPSLLERGSVTLVMTVLLIMFLFQYLPKIYHSVCLLRRMQNVSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKDQCSKTNGCGLRILSCKQPIYYGTNGMVKDAARLAWAHNRQVRSTCLDTPDNFDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPGGFRQRVRNYERQRWAAMRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEADDVKYVTQHFRYTFMNDKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNADDYDF 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0628 687 FunFam cyclic nucleotide-gated ion channel 4 488 606 - -
Bisa12g0628 687 MobiDBLite consensus disorder prediction 1 52 - -
Bisa12g0628 687 MobiDBLite consensus disorder prediction 26 48 - -
Bisa12g0628 687 FunFam Cyclic nucleotide-gated ion channel 1 417 481 - -
Bisa12g0628 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 646 - -
Bisa12g0628 687 CDD CAP_ED 490 596 IPR000595 -
Bisa12g0628 687 Pfam Cyclic nucleotide-binding domain 511 598 IPR000595 -
Bisa12g0628 687 Gene3D Helix hairpin bin 415 481 - -
Bisa12g0628 687 SMART cnmp_10 490 619 IPR000595 -
Bisa12g0628 687 MobiDBLite consensus disorder prediction 11 25 - -
Bisa12g0628 687 Gene3D Jelly Rolls 488 606 IPR014710 -
Bisa12g0628 687 SUPERFAMILY Voltage-gated potassium channels 79 411 - -
Bisa12g0628 687 ProSiteProfiles cAMP/cGMP binding motif profile. 490 600 IPR000595 -
Bisa12g0628 687 Pfam Ion transport protein 87 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bisa12g0628 687 SUPERFAMILY cAMP-binding domain-like 416 604 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0628 Bisa-ChrBisa12 9399727 9407763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0628 74 686 Ion Channels AT5G54250 80.875 0.0 1027