Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0625 ATGAACGAGAAGGCTAACGTGTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTGGAAGGACTTCTTAAATTACCAGAAAATAGGGAGTGTGCCGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTGAATCTAGGCATCTTTATATGTATGCAATGTTCAGGAATACATCGAAGTCTGGGGGTGCATATATCAAAGGTGCGATCTGCAACTCTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATCCAATCAATGGGAAATGAGAAAGCAAACAGTTATTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGAATCGAGAATTTCATTCGTGCAAAGTATGAAGATAAGAGGTGGGTTGCAAGGGATGGAAAACCAAAATCACCTTCTAGACTGCAGGAAGACAAGGCTTCTTCATATCAGCAGAGGCCTGCGGAAAGAAGTGGACACAGTTCTTACGCATCTGCTTCTGAGAATACTTTTGAGAAAAAGAAGAAAATTCAACCATCAAATATAAATCCTGCCACAAGATTTAGTGTTCCTGCTCCTCCAAGAGGACCTGAGCTGGTAACAACCGTTACAAAACCTCAGCATGTTGAGAAAGTGGAAGTAGTGGTACCGCAACCTCAAGCTGAGACAACAAAGCAGGCTAGTGAGGTGGCTCAGAATACTTCTGCAAAAGTTGACTTTGCCACAGATCTCTTTGACATGTTGTCTATGGATGGCCCTAGTGAAAATGGATCGGAGGCTGTTGGTACTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGACTTCTGAGAAGACTGGTCCCACAAAAGCAGTTGAGAGTACTCGTCAATCTGCTTCTGGAATTGAGGATCTATTTAAAGATTCATCTCTGGTGACACCAAGCTTGGTTCCAGAAAAACCACAAAAAGATGAAAAAAAAATTGAGGATCTATTTAAAGATTCATCTTTGGTGACACCCAGCTTAGTTCCAGAGAAGCCACAAAATGATGAGAAAAAAATTGAGGATCTATTTAAAGATACATCTTTGGTGACACCAAGCTTAGTTCCAGAAAAACCACAAAAGGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATATGGTGTCTCCGTTTGCAATGCATCAACAGCAGCTTACCATGCTGGCACAACAGCAGTCCCTTCTTCTGGCTGCTGCAGCTAAATCTGCTGGTGGGGACCCCAAGAATCCTGGTAGATTGCAACAACCTGGACTGAATGGATCCAATAATCCTGGCCAAAGTTGGCCAACTGTTGGCTACCCAAATCCTGGAGTTTTGCCCATGACCAGTCAGGCAGAGCTGCTGAAACTCATGCAGACGGGGAACATGATTCCTGCACAACCAGCAGGGAGTGCTGTTCAGTATCCATCAGCTGGTTTCTATATGATGGGACAAGTTCCTCCAGTTAATGGCACGACGACAAAAGGAGCGAGTAAACCCCGGTCAGCATCTCCAGTATCATCAGCATCTCCGCTATCATCAACCTCCTCTACCCAGGCGTCAGGGAAGGACTACGATTTTTCTTCTTTAACACAAGGGATGTTTGCGAAACAATGA 1620 0.4438 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDGKPKSPSRLQEDKASSYQQRPAERSGHSSYASASENTFEKKKKIQPSNINPATRFSVPAPPRGPELVTTVTKPQHVEKVEVVVPQPQAETTKQASEVAQNTSAKVDFATDLFDMLSMDGPSENGSEAVGTTADDNNWAGFQSAAEASTSEKTGPTKAVESTRQSASGIEDLFKDSSLVTPSLVPEKPQKDEKKIEDLFKDSSLVTPSLVPEKPQNDEKKIEDLFKDTSLVTPSLVPEKPQKDVKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLLAAAAKSAGGDPKNPGRLQQPGLNGSNNPGQSWPTVGYPNPGVLPMTSQAELLKLMQTGNMIPAQPAGSAVQYPSAGFYMMGQVPPVNGTTTKGASKPRSASPVSSASPLSSTSSTQASGKDYDFSSLTQGMFAKQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0625 539 CDD ArfGap 19 117 - -
Bisa12g0625 539 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Bisa12g0625 539 MobiDBLite consensus disorder prediction 136 161 - -
Bisa12g0625 539 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Bisa12g0625 539 MobiDBLite consensus disorder prediction 269 297 - -
Bisa12g0625 539 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Bisa12g0625 539 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 333 IPR044520 GO:0005096
Bisa12g0625 539 MobiDBLite consensus disorder prediction 407 440 - -
Bisa12g0625 539 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Bisa12g0625 539 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Bisa12g0625 539 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Bisa12g0625 539 MobiDBLite consensus disorder prediction 492 539 - -
Bisa12g0625 539 MobiDBLite consensus disorder prediction 269 296 - -
Bisa12g0625 539 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Bisa12g0625 539 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Bisa12g0625 539 MobiDBLite consensus disorder prediction 422 438 - -
Bisa12g0625 539 MobiDBLite consensus disorder prediction 124 190 - -
Bisa12g0625 539 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0625 Bisa-ChrBisa12 9296980 9303606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0625 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 7.38e-30 118