Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0581 ATGAGGTCCAGGTCGAGGGGTCGCCGGAGAAGCCGTGTCCGGCCATCGGTTTCTTCAGCTGATGCTGAACCCAGACACTTTATGAAGCTCATTCTTCCCGAAACCATTCATGGCAAAGAAATGAGAATTCCACAGGAATTTATAACAAGATTTGGGAATGAACTATCTAGTGAGGCAACTATTACTGTTCCAGACGGTCTTGTTTGGAAAATGGAATTGAAGAAATCTGCTGACGAGGTCTGGCTTTGCAACGGTTGGCGAGCATTTGTAAAATACTACTCTATCTGTTATGGCTTTTTCTTGGTGTTCAAATATGAAGGGAATTCACATTTCAGTGTTGTCATCTTTGATATGAGTGCTGCTGAGATTCACTATCCATGCAAGAATGAGAGTAACAAAGAGGAAACTAACTTTGAGAAGCAGCCCTCAGGAACAGAATGGTCTAAGCTGGAAAGTGAAGAAGAAATAATTGATGTAGATGATGTGAATGCACTGAGTCAAGGCAAATCAGGAAAGAATGTCAGTTATAATGCTCATGAGCATTCAAGGAAACATGAAAGAGGTGGATCTAGGCATGGCTCTTCTTCCCAAATGGAGAATATATTGAGAAAAAAGCAAAGGGCTATTGAAGCTGCCCAAAAGTTCAAGCCAGAAAATCCTTCTTTCACTGCAATAGTGAGGCCATCTAACATGACTTCTCGTTACATGGATGTGCCAGCTTCATTTGCAGCAAGCTATCTGTGGAAATTCAATTTTGTGAAGCTCCAGGATTCTAATGGACAACAGTGGGTGGTTCGTTGTCATAAGCGTTATAGGTCGCGTATGCGAATGCTGAGGGGTTGGATCGATTTTGCGAAGGCCAACAATTTGAGGGAAGGAGATCCTTATATGCTGCTGCATGCACACTGCCTCATGGATTCCACTTTGGCCTTCTTAAAACCCGCTTATGTATATGACAAGTGA 963 0.4268 MRSRSRGRRRSRVRPSVSSADAEPRHFMKLILPETIHGKEMRIPQEFITRFGNELSSEATITVPDGLVWKMELKKSADEVWLCNGWRAFVKYYSICYGFFLVFKYEGNSHFSVVIFDMSAAEIHYPCKNESNKEETNFEKQPSGTEWSKLESEEEIIDVDDVNALSQGKSGKNVSYNAHEHSRKHERGGSRHGSSSQMENILRKKQRAIEAAQKFKPENPSFTAIVRPSNMTSRYMDVPASFAASYLWKFNFVKLQDSNGQQWVVRCHKRYRSRMRMLRGWIDFAKANNLREGDPYMLLHAHCLMDSTLAFLKPAYVYDK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0581 320 ProSiteProfiles B3 DNA-binding domain profile. 221 315 IPR003340 GO:0003677
Bisa12g0581 320 PANTHER B3 DOMAIN-CONTAINING 19 294 - -
Bisa12g0581 320 SMART B3_2 27 119 IPR003340 GO:0003677
Bisa12g0581 320 SMART B3_2 222 315 IPR003340 GO:0003677
Bisa12g0581 320 Gene3D - 18 121 IPR015300 -
Bisa12g0581 320 Gene3D - 201 302 IPR015300 -
Bisa12g0581 320 MobiDBLite consensus disorder prediction 166 200 - -
Bisa12g0581 320 CDD B3_DNA 220 294 IPR003340 GO:0003677
Bisa12g0581 320 MobiDBLite consensus disorder prediction 1 21 - -
Bisa12g0581 320 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Bisa12g0581 320 Pfam B3 DNA binding domain 223 301 IPR003340 GO:0003677
Bisa12g0581 320 Pfam B3 DNA binding domain 33 117 IPR003340 GO:0003677
Bisa12g0581 320 MobiDBLite consensus disorder prediction 176 192 - -
Bisa12g0581 320 SUPERFAMILY DNA-binding pseudobarrel domain 215 300 IPR015300 -
Bisa12g0581 320 CDD B3_DNA 25 117 IPR003340 GO:0003677
Bisa12g0581 320 SUPERFAMILY DNA-binding pseudobarrel domain 21 119 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0581 Bisa-ChrBisa12 8589376 8593705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0581 204 294 B3 DNA Binding Superfamily AT3G18990 39.785 3.27e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa12g0581 B3 6.3e-12 CL0405