Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0580 ATGGACCTGCAGAGAATTCCAAAGGAGTTTATAACAAGATTTGAGAATGAACTATCTAGTGAGGTAACTATTACCGTTCCAGACGGTCTTGTTTGGCAATTGGGATTGAAGAAATCTGCTGACGAGGTTTGGTTTTGCAACGGTTGGCGAGAATTTGTAAAATACTACTCTATTTGTCATGGCTTCTTCTTGGTGTTCAAATATGAAGGGAATTCACATTTCAGTGTTGTCATCATTGATATGAGTGCTGCTGAGATTTATTATCCATGCAAGAATGAGAGTAACAATGAGGAACCTTTGAGAAGCGTCCCTCAGAAACAGAATGTTGTAGGAAAAGGTCCAGACATGATCAATGTGGCTACCACACAAACACAAGGCTCAAGAGGATGTGCCAGCTTCATTTGCAGCAAGTTATCTGTGGAAATCGATTTTGTGAAGCTCCAGGATTCTAATGGACAACAATCGGTGGCTCATTGCCATAAGCGTTATAGGTCACATATGCGAATGCTGAGGGGTTGGATCGATTTTGCGAGAGACGACAATTTGAAGGAAGGAGATGTCTGA 564 0.4149 MDLQRIPKEFITRFENELSSEVTITVPDGLVWQLGLKKSADEVWFCNGWREFVKYYSICHGFFLVFKYEGNSHFSVVIIDMSAAEIYYPCKNESNNEEPLRSVPQKQNVVGKGPDMINVATTQTQGSRGCASFICSKLSVEIDFVKLQDSNGQQSVAHCHKRYRSHMRMLRGWIDFARDDNLKEGDV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0580 187 SUPERFAMILY DNA-binding pseudobarrel domain 4 82 IPR015300 -
Bisa12g0580 187 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Bisa12g0580 187 Pfam B3 DNA binding domain 5 79 IPR003340 GO:0003677
Bisa12g0580 187 SUPERFAMILY DNA-binding pseudobarrel domain 144 187 IPR015300 -
Bisa12g0580 187 CDD B3_DNA 5 80 IPR003340 GO:0003677
Bisa12g0580 187 SMART B3_2 3 82 IPR003340 GO:0003677
Bisa12g0580 187 Gene3D - 124 187 IPR015300 -
Bisa12g0580 187 Gene3D - 2 83 IPR015300 -
Bisa12g0580 187 PANTHER B3 DOMAIN-CONTAINING 5 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0580 Bisa-ChrBisa12 8569398 8575894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0580 5 88 B3 DNA Binding Superfamily AT3G18990 52.381 1.08e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa12g0580 B3 1.3e-11 CL0405