Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0560 ATGGCGCAGCTTAGAAGTTTTCCCTCGACCTTTTTCCCATGGGGTTTCTTGGCTTGCTTTCTCTGCTTATCTCTCGCAGCTCCATATTGTGACCCACGTGATTTACTGGCTCTGAAGCAATTTGCAGGCAACCTTACAAATGGATCCATCATCACAGCCTGGTCTGATGATGTTTCCTGCTGCAAATGGACTGGAGTTGTCTGTGCTAATGTCACCAATGGGACATCTGCTGGTAGAGTGACGAGGTTGGTTCTGCCACAAATGGGTATCGAAGGGAAAATTTCACCCTCTCTAGCACTACTTGATCATCTAAATCAGCTGGATCTTTCATTCAATCATCTCCAAGGTCAATTGCCTGCAGAATTCTCCAAGTTGAAGCAGCTGAAAGTTCTTGACTTGAGCCACAACATGCTGTCAGGACCAATTTCTGGGGCTCTTTCTGGTTTACAATCCATTCAGATACTGAACATTTCGAGCAATTCGTTTATTGGAAATCTCTGGCAGTTTGGGGAGTTTCCCCATATCCTTGAATTTAACATAAGCAACAATTTATTCAGTGGTGGGTTCAGTTCTCGAATATGCAGTCCCTCCAAGGGGCTTCATGTTCTTGATTTATCTGCAAATCATTTAGCTGGTGGTCTTGAAGGCTTGGACAATTGTAGCACATCTCTCCAACAGTTGCATTTGGATTGCAATTCATTTTCAGGCCCAATTCCAGATTCATTATACTCAATGTCGGCCTTGGAGCAGCTCTCAATCTCTGTGAACAATATCTCTGGCCAGTTAAGCAGGCAATTAAGTAAGCTCTCTGGCCTGAAGTCTCTTGTAATTTCTGGAAACCACTTTTCAGGAAAAATTCCTGATGTTTTTGGGAACCTTACTCATCTAGAACAAGTTATAGCACATTCCAATATGTTCGCCGGACAATTGCCTTCAACCCTATCTTTATGCTCAAATCTTCGGGTGCTTGATTTTCGGAACAATTCTCTTACAGGTCCTATTGATCTTAATTTCACTGGGTTGCCTAATCTTTGGGCACTCTCTGTATTTCAGCAGTGCAAAAATCTTACCACTCTTATTCTGACAAAGAATTTTCATGGTGAGAGAATTCCAGAAGGTGTGACTGGATTTCAGAGCCTTATGATCTTAGCACTTGGGAATTGTGGTCTTAAAGGCAAAATCCCTGTTTGGCTATTGAAATGCAGGAATTTGCAAGTCCTTGATTTGTCTTGGAACCATTTGGAAGGTACCATCCCTTTGTGGATCGGTTGGATGGACAATCTGTTTTATTTGGATTTCTCAAACAATTCTCTTACAGGAGAGATACCAAAAAGTTTGACTTCATTGGGGGCCCTCATATCCACAAATTTCAGTAGATTAAAATCGAGTCCTGCTTCAAATGCAGGTATTCCTCTCTATATTAAGCGAAACCAGACTGCTAATGGGCTGCTATATAATCAGGCCTCAAGTTTCCCTCCTTCAATTTACTTGAGTAATAACAGATTAAGTGGGGTAATTTGGCCAGAAATCGGGCGATTGAAGGCACTGCATGTCTTAGATTTAAGCAGGAATAACATCAGTGGTACCATTCCGAGCTCTATTTCAGAGATGGAGAACTTGGAAACATTAGATTTATCAAATAACAATCTCTATGGAACAATCCCTCCATCATTTAAGAAGCTCACATTCCTGTCAAAGTTCAGTGTAGCATATAATCACTTGGAGGGGCCAATTCCGACAGGGGGACAGTTTCTTAGCTTTTCTAGTTCAAGCTTTGAAGGCAATTTGGGACTTTGTAGGGATATAGATGCCCCTTGCAAATTTGTTGGTGAAGCAGGGTTCAAGCCCAATATTGCCTCTGGCCCAGCCAGCAAATTTGGCAGAAGCTATGTCCTTGGCCTAACAGTCAGTGTAGGTATAGGGCTTGCAGTGTTTCTTGCAATTTTTCTTTTAAAAATATCGAAAACGGATGAGGATAAGCCAATTTTGTACGTTGCTGAGGAACATAACTGGCCAAACATGTCACCTGAAGCCCTTGTTTCTTCAAAATTGGTACATTTTCTGAATTCAGATTCCAAAGATCTCACAGTTGAAGATTTGTTAAAATCCACAGACAATTTCAACCCAGAGAACATAATCGGTTGTGGCGGGTTTGGTCTTGTCTACAAGGCAATTCTTCCAAATGGCACAAGAGCAGCTATCAAGAGACTTTCAGGCGACTGCAGTCAGATGGAGCGCGAATTCCAAGCTGAAGTTGAAGCCCTCTCTAGAGCTCAGCACCCGAACCTTGTTTCTCTTAAAGGATATTGCCAGCATCGCAATGACAGATTCTTTGGGGTTGTTCTTTTCGAGCTTCTAACTGGAAGAAGGCCAGTAGAAGTCATCAAGGGAAAAGGCTGCAGGAATCTGGTGTCCTGGGTCATCCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCATCCATTTGGCACAAGGATCACGAGAAACAGCTGTTGGAGGTTCTCTCAATTGCCGGTAAATGTACAGACCCAGTTCCTAGGCAGAGACCGAGTATTGAAGAGGTTGTTTCATGGCTTGACGGTGTCTGA 2595 0.4258 MAQLRSFPSTFFPWGFLACFLCLSLAAPYCDPRDLLALKQFAGNLTNGSIITAWSDDVSCCKWTGVVCANVTNGTSAGRVTRLVLPQMGIEGKISPSLALLDHLNQLDLSFNHLQGQLPAEFSKLKQLKVLDLSHNMLSGPISGALSGLQSIQILNISSNSFIGNLWQFGEFPHILEFNISNNLFSGGFSSRICSPSKGLHVLDLSANHLAGGLEGLDNCSTSLQQLHLDCNSFSGPIPDSLYSMSALEQLSISVNNISGQLSRQLSKLSGLKSLVISGNHFSGKIPDVFGNLTHLEQVIAHSNMFAGQLPSTLSLCSNLRVLDFRNNSLTGPIDLNFTGLPNLWALSVFQQCKNLTTLILTKNFHGERIPEGVTGFQSLMILALGNCGLKGKIPVWLLKCRNLQVLDLSWNHLEGTIPLWIGWMDNLFYLDFSNNSLTGEIPKSLTSLGALISTNFSRLKSSPASNAGIPLYIKRNQTANGLLYNQASSFPPSIYLSNNRLSGVIWPEIGRLKALHVLDLSRNNISGTIPSSISEMENLETLDLSNNNLYGTIPPSFKKLTFLSKFSVAYNHLEGPIPTGGQFLSFSSSSFEGNLGLCRDIDAPCKFVGEAGFKPNIASGPASKFGRSYVLGLTVSVGIGLAVFLAIFLLKISKTDEDKPILYVAEEHNWPNMSPEALVSSKLVHFLNSDSKDLTVEDLLKSTDNFNPENIIGCGGFGLVYKAILPNGTRAAIKRLSGDCSQMEREFQAEVEALSRAQHPNLVSLKGYCQHRNDRFFGVVLFELLTGRRPVEVIKGKGCRNLVSWVIQMKSENKEQEIFDPSIWHKDHEKQLLEVLSIAGKCTDPVPRQRPSIEEVVSWLDGV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0560 864 FunFam Tyrosine-sulfated glycopeptide receptor 1 335 610 - -
Bisa12g0560 864 Gene3D Ribonuclease Inhibitor 167 348 IPR032675 -
Bisa12g0560 864 SMART LRR_sd22_2 245 274 - -
Bisa12g0560 864 SMART LRR_sd22_2 317 338 - -
Bisa12g0560 864 SMART LRR_sd22_2 513 542 - -
Bisa12g0560 864 SMART LRR_sd22_2 125 151 - -
Bisa12g0560 864 SMART LRR_sd22_2 197 219 - -
Bisa12g0560 864 Pfam Leucine Rich repeat 400 416 IPR001611 GO:0005515
Bisa12g0560 864 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Bisa12g0560 864 PRINTS Leucine-rich repeat signature 537 550 - -
Bisa12g0560 864 PRINTS Leucine-rich repeat signature 128 141 - -
Bisa12g0560 864 Pfam Leucine rich repeat 494 550 IPR001611 GO:0005515
Bisa12g0560 864 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Bisa12g0560 864 Pfam Leucine rich repeat 223 282 IPR001611 GO:0005515
Bisa12g0560 864 Gene3D Ribonuclease Inhibitor 33 151 IPR032675 -
Bisa12g0560 864 Gene3D Transferase(Phosphotransferase) domain 1 779 864 - -
Bisa12g0560 864 SUPERFAMILY L domain-like 238 594 - -
Bisa12g0560 864 ProSiteProfiles Protein kinase domain profile. 707 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0560 864 FunFam Leucine-rich repeat receptor-like kinase 34 151 - -
Bisa12g0560 864 Gene3D Phosphorylase Kinase; domain 1 674 778 - -
Bisa12g0560 864 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 199 774 - -
Bisa12g0560 864 ProSiteProfiles Leucine-rich repeat profile. 539 561 IPR001611 GO:0005515
Bisa12g0560 864 Pfam Protein tyrosine and serine/threonine kinase 711 774 IPR001245 GO:0004672|GO:0006468
Bisa12g0560 864 SMART LRR_typ_2 537 560 IPR003591 -
Bisa12g0560 864 SMART LRR_typ_2 269 292 IPR003591 -
Bisa12g0560 864 SMART LRR_typ_2 513 536 IPR003591 -
Bisa12g0560 864 SMART LRR_typ_2 101 124 IPR003591 -
Bisa12g0560 864 SMART LRR_typ_2 125 148 IPR003591 -
Bisa12g0560 864 SMART LRR_typ_2 401 425 IPR003591 -
Bisa12g0560 864 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 298 - -
Bisa12g0560 864 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Bisa12g0560 864 SUPERFAMILY Protein kinase-like (PK-like) 701 861 IPR011009 -
Bisa12g0560 864 SUPERFAMILY L domain-like 54 312 - -
Bisa12g0560 864 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Bisa12g0560 864 Gene3D Ribonuclease Inhibitor 349 609 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0560 Bisa-ChrBisa12 8235616 8238747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0560 16 648 Miscellaneous Gene Families AT1G17240 35.097 1.82e-118 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Bisa12g0560 PK_Tyr_Ser-Thr 1.2e-06 CL0016