Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0544 ATGGAGGGTTTCTTCTTCTCAGTCCACAAGCAGAGACACCCAGAAAAGCAGAACAAGAAGAGGCTAACAGAAGATCAAGTGGCTATTCTGGAGAAAAGCTTTGCCTGCAACAAGAAGCTGGAGGTAGAGCAGAAACTGGAGCTGTCAAACCAACTCGGTGTGCCTGCCAGACAGACTGCCGTGTGGTACCAGAACAAACGAGCTCGCTGGAAGACCCAGAGTCTCGAGGTGGACTATGGTGCACTGCAGAGAGTGATGGCTGAGAAGAAGCAGCTCGAGAGAGACGTGGAGAGGCTCAAGGTAGAGCTGAAGGAAGCCATGGAGATGCTGCTTTTCTGA 339 0.5162 MEGFFFSVHKQRHPEKQNKKRLTEDQVAILEKSFACNKKLEVEQKLELSNQLGVPARQTAVWYQNKRARWKTQSLEVDYGALQRVMAEKKQLERDVERLKVELKEAMEMLLF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0544 112 Gene3D - 15 78 - -
Bisa12g0544 112 MobiDBLite consensus disorder prediction 1 20 - -
Bisa12g0544 112 Pfam Homeodomain 17 71 IPR001356 GO:0003677
Bisa12g0544 112 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 110 IPR045224 GO:0003700
Bisa12g0544 112 Coils Coil 82 109 - -
Bisa12g0544 112 CDD homeodomain 16 74 IPR001356 GO:0003677
Bisa12g0544 112 SUPERFAMILY Homeodomain-like 15 81 IPR009057 -
Bisa12g0544 112 SMART HOX_1 15 77 IPR001356 GO:0003677
Bisa12g0544 112 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0544 Bisa-ChrBisa12 8034290 8034628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0544 16 110 Homeobox Transcription Factor Family AT5G53980 57.576 5.03e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bisa12g0544 Homeodomain 1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0544 12 8034290 8034628 Bisa12g0544 12 8034290 8034628 ECH