Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0532 ATGGGAGTTGCAGCCTCATCTAATTTATATTATTCTGCCATGAATCCCTCATCTGGTACTGGTGCATTACCTCAGCCCATAAATCACCGAGCTTCTGAACAATTGCCAGCATCAAGCACATATGCTATCTCTGGATTTTCTTCAGATAATTTTGGAAGGTGCAATGGCTTTATGGATGATGCCAGAGGTCCATACAAACGAAAAATTGCTGAGGGTACCAGAGGAAATTACCAGTATTTTAATGGTGCAGCTAGTTCTTCAGTTGCTCCTCCAAATGCAAGGCATTCTGATGGGGTTACTATGATGGATAGTGCATCCTTTTCCCTGCCTCAGTTTAGAGGAAATGGCTTTCCATCACTTGTGGAAGTTGGACCTCATGGTAGTCTGTGGAGTAGGTCAGGTGAGTCTTTTATGGTACATGAACACAACCATTTGATTAGAGGAAACTATTTAGGGCAGCACTTTCAACCAGCTCCTCCTCCTTGGTTGGAGCAGCAGTTGAACAGTACTAACAGCGATGGCCATAATATGGCCTGGAACCAGTCTCGGTCAATGCCTTATATGCAAGCACCTATTGTTAATGGGAATTCGTTGGAAAATGCAAATATGGGCATCCAGAGATATCATGATACAGCTAACAACGGAAACAGTCTCAGGTTTCCTCATGCTCCTCCTGTCAACCATCTTAACCATAGTTATCACCTTCCAACACTACCTATGCAAGGAGGGAGAGGCCACAGTTTCAGTTTCCGCCCTCCAATAACTTCAGCCACTTATAGGGTTCAATCAAATTCTTCACGCAGTGCTGTTATCCCAATGCAGAATGGTTTTGAGTTAGGTGTTAGGCATAATAATTCTGCACCGTCAACAAGCCTACGGATAAATCGTCCTCTTAGAGGAGTCATGCCCGAGACAACTCTCAGACTTCAAAACTTTCCCCACATGAGATTTCTCCTTGTTGATGATGTTGCTATGCTTGATAATTCGGGAAATTTGGTTGACCATCATAGTGATATGCGCTTAGACATTGACGATATGTCTTATGAGGAGCTTCTTGCTTTAGGTGAGCGAATTGGCAATGTGAGGACTGGTTTATCAGAGGAAACCATTACAACTCAATTGAAGACAAAAACTTACAAATCCTCTGCTACTATTAATCTAGAGGAGGCAGCCATTTCTGAGGATCAAGAAACTGATAATTGCATCATATGCCAAGATGATTTTAAGAACCTGGAGACGATTGGAATTCTTAAATGTGGGCATGAGTATCATTCTGATTGCTTGAAGAAATGGTTGCTGGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGTGA 1341 0.4251 MGVAASSNLYYSAMNPSSGTGALPQPINHRASEQLPASSTYAISGFSSDNFGRCNGFMDDARGPYKRKIAEGTRGNYQYFNGAASSSVAPPNARHSDGVTMMDSASFSLPQFRGNGFPSLVEVGPHGSLWSRSGESFMVHEHNHLIRGNYLGQHFQPAPPPWLEQQLNSTNSDGHNMAWNQSRSMPYMQAPIVNGNSLENANMGIQRYHDTANNGNSLRFPHAPPVNHLNHSYHLPTLPMQGGRGHSFSFRPPITSATYRVQSNSSRSAVIPMQNGFELGVRHNNSAPSTSLRINRPLRGVMPETTLRLQNFPHMRFLLVDDVAMLDNSGNLVDHHSDMRLDIDDMSYEELLALGERIGNVRTGLSEETITTQLKTKTYKSSATINLEEAAISEDQETDNCIICQDDFKNLETIGILKCGHEYHSDCLKKWLLVKNVCPICKSEAL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0532 446 ProSiteProfiles Zinc finger RING-type profile. 401 442 IPR001841 -
Bisa12g0532 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 445 IPR013083 -
Bisa12g0532 446 SMART ring_2 401 441 IPR001841 -
Bisa12g0532 446 FunFam E3 ubiquitin ligase BIG BROTHER 361 446 - -
Bisa12g0532 446 SUPERFAMILY RING/U-box 392 444 - -
Bisa12g0532 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 61 446 IPR045191 GO:0061630
Bisa12g0532 446 CDD RING-H2_RNF24-like 399 445 - -
Bisa12g0532 446 Pfam Ring finger domain 399 442 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0532 Bisa-ChrBisa12 7916545 7918524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0532 307 446 C3H Transcription Factor Family AT2G15530 45.714 1.73e-37 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0532 12 7916545 7918524 Bisa12g0532 12 7916545 7918524 ECH