LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0506	ATGAGGTGTTTCTCTGTTCTTTTCAGAAAAAAAGAATCTGTCTCTGCCACACAATCGCCTTTTACTGACATTGATGTTTCAGATGTTCAAAATGTCAACCTTTACACTTACAAGGAACTGCGATTTGCCACTGAAGGCTTTAGTCCAGCAAACAAGATTGGGGAGGGTGGTTTTGGATCTGTCTATAAGGGAAAGCTGAGAGATGGTACTCTGGCTGCTATCAAGGTGTTGTCGGCCGACTCAAAGCAAGGGGTTCGGGAATTCCTGACAGAAATCAAGGTGATTACTAGTATAGAGCATGAGAATCTAGTTAAGTTGTATGGATGCTGTGTGGAAGGAAATCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCCCAAACACTTCTTGGTGGAAGCCATAGCAGCATCCAATTCAGTTGGCCTGTACGGAGGAAAATTTGCATTGGTGTTGCACAGGGCCTAGCATTTCTTCATGAGGATGTTGAGCCACACATTATTCATAGAGACATTAAAGCGAGCAATATACTACTTGACAAAGACCTGCAGCCCAAGATCTCTGATTTTGGTCTTGCAAAGCTTATTTCACCAAACCTGACACATATTAGTACACGTGTTGCTGGAACGGCTGGTTATCTGGCACCTGAGTATGCTATACGAAATCAAGTGACAAGAAGATCAGATGTCTACAGTTTTGGAATTCTACTACTAGAAATTGTTAGTGGGAGGTCTAACACAAATAGACGATTACCTGTTGAAGAGCAATATCTTCTTCCGAAGGCATGGAATATGTATGAAAGGGGGGAGCTGGAGCAACTAGTTGATGCATTGCTAGGAGGCAACTTCAGTATTGAGGAGGCATGCAGGTTTTGTAAGATTGGTCTCCTCTGCACTCAGGATTCTCCTCAGCTCCGACCATCAATGTCTAAGGTGCTTGGCATGCTGACGGGTGAAATTGATGTGAATGACAAGGAGATAACTAAACCGGGCTTGCTATTTGAATTTGTAGATGCCGGAGATGAAGGTAAACAGAAAGCCAAGATTGAAATGGAAGATGCATCTTCGCTGGCTGTCCCAGGGAAGCAAGATTATTCATCTTCATCAGGAATCACGACCTCTTTTGCTACCATGACCTTCACTTCCATTTATGACCGAAGCAATTAG	1173	0.4322	MRCFSVLFRKKESVSATQSPFTDIDVSDVQNVNLYTYKELRFATEGFSPANKIGEGGFGSVYKGKLRDGTLAAIKVLSADSKQGVREFLTEIKVITSIEHENLVKLYGCCVEGNHRILVYGYLENNSLAQTLLGGSHSSIQFSWPVRRKICIGVAQGLAFLHEDVEPHIIHRDIKASNILLDKDLQPKISDFGLAKLISPNLTHISTRVAGTAGYLAPEYAIRNQVTRRSDVYSFGILLLEIVSGRSNTNRRLPVEEQYLLPKAWNMYERGELEQLVDALLGGNFSIEEACRFCKIGLLCTQDSPQLRPSMSKVLGMLTGEIDVNDKEITKPGLLFEFVDAGDEGKQKAKIEMEDASSLAVPGKQDYSSSSGITTSFATMTFTSIYDRSN	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0506	390	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	123	330	-	-
	Bisa12g0506	390	Gene3D	Phosphorylase Kinase; domain 1	19	122	-	-
	Bisa12g0506	390	ProSiteProfiles	Protein kinase domain profile.	47	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0506	390	SMART	serkin_6	47	307	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0506	390	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	30	347	-	-
	Bisa12g0506	390	FunFam	cold-responsive protein kinase 1	18	122	-	-
	Bisa12g0506	390	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Bisa12g0506	390	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Bisa12g0506	390	SUPERFAMILY	Protein kinase-like (PK-like)	29	318	IPR011009	-
	Bisa12g0506	390	Gene3D	Transferase(Phosphotransferase) domain 1	123	331	-	-
	Bisa12g0506	390	Pfam	Protein kinase domain	50	248	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0506	390	CDD	STKc_IRAK	53	320	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0506	Bisa-ChrBisa12	7629425	7632674	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0506	35	371	Receptor kinase-like Gene Family	AT1G53430	52.907	8.23e-110	343

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa12g0506		Pkinase	2.1e-46	CL0016