Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0501 ATGTCGCATTCTGGGAAGACTGATTCCGAGCTAGGGCTCGACAATCTCAACGATCAATTTCGCGACTCACTGAACTGTGAAGCGAACAAGCCGGATTATCGCGAGCTCGATCTGGGTTCGCCGGTTTCCCCATTGCGGCCTCGTCAGAGTGGACGTGCTGCTAGTGGACTCACCACTACTACTAGTAGTTCCAGTTCATCCGGATCGGTTTCTGGGCGCAACCCGGTCGCGAAAAGATCACGTGCCAACAGCCACTCCGGCGAGCTCTCTGGCTCCAGCGAGAATAGTCCGACCGCCAAAGAGACCCTTAGATCACCGAGGAATGCCAGAAACTCTAAGCCGGGTCACGCAAGATCGGATTCAGGAACCATCCCGCCAAAAAAGAATTCGGGTCAGACCTCATCCGCCACATCACCAGCTTTGAATGTTCTCCCTACCGGCAATATCTGTCCTTCCGGCAGGGTTCTGACGACGGGCATGGCAACTAATCGGTCCCCCAGGTCAGACGTTTTGGGCTCCGGTTTGGGCAATTACGGCCACGGAAGTATAATGCGGGCCGGTGGAGCATCCAAACATATCATTGGAGAGGCGTCGAGTACACCAAATGCGGGGACAAGCGGTGTTGGCGGTGTGAAAGAGCCGGCTAGGAAAGTGGAGACGAACGCGGATCCGGAAGAGTTGAAGAGAGCGGGTAACGAGCAGTACAAGAGAGGCCACTTTGCAGAGGCATTGAGTCTATACGATCGGGCAATTGCATTGTCCCCGGGTAACGCTGCCTTCCGGAGCAACCGGGCGGCGGCATTGACGGCTTTGGGTCGGTTCGCTGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATTCTAATTATGTGAGGGCCCGTCAGCGTTTGGCGTCTCTTTTCCTCCGGTTAGGACAAGTTGAGAATGCCAGGAAGCACCTCTTTTGTCAAGGGCAGCCAGATCCTTCTGAGTTGCAGAAGTTGCAATTGGTGGAGAAGCATATCAACAAATGTGCGAATGTTCGAAGGGTAGGTGATTGGAAATGTGTCCTTAGGGAAGTTGACGCTGCTGTTGCAGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCTTTCTGAAGCTCCACCAAATAAATGATGCCGAATTGATTCTGTTAACTATTTCCAAAACAGAATCACATTCTATATCCTCTTCTCAGGCAAGATTTTTTGGGATGCTTTCTGATGCTTATTCCTTCTTAGTCAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGGATGCAGTTTCAGCCGCTGAGAAAGCTAGTACAATTGATCCCCGGAACATTGAAGTTGCCGTTTTGCATAAGAATGTAAGGATGGTGGCTAGAGCTCGAGCACGTGGCAATGATCTTTTCAAATCCGAACGGTATACCGAAGCTTGCTCTGCATATGACGAAGGTTTGAGGCTGGACCCTTCAAATGCTGTTCTCTATTGCAACAGAGCTGCTTGTTGGTTTAAGCTTGGGCTATGGGAAAGATCACTTGAAGACTGTGATCATGCTTTACTTATCCAATCAAATTACACAAAAGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGTTAGAGAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGAAGAGAACTTCCAGATAACAATGAAGTTGCTGAAGCTCTCTTTCATGCACAAGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTTGGTGGTGAAGTAGAGGAAGTATCTGGTCTTGAGCAGTTTAAAGCTGCTATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAATAGAATCTAACTCACAATGCAAGCAAATTTCACCATTTGTGAATACACTTTGCAGTCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAGAAAAGCCCAACAGTTGCAACTGCTGAGAACGTTAGGATTGTACCAACTTTCAAGATCTACAAAAATGGCAGCCGAATGAAGGAAATTGTATGCCCTAGTTGTGATATGTTGGAACAGTCTGTGAGGCATTACAGCTTTTAG 2088 0.4823 MSHSGKTDSELGLDNLNDQFRDSLNCEANKPDYRELDLGSPVSPLRPRQSGRAASGLTTTTSSSSSSGSVSGRNPVAKRSRANSHSGELSGSSENSPTAKETLRSPRNARNSKPGHARSDSGTIPPKKNSGQTSSATSPALNVLPTGNICPSGRVLTTGMATNRSPRSDVLGSGLGNYGHGSIMRAGGASKHIIGEASSTPNAGTSGVGGVKEPARKVETNADPEELKRAGNEQYKRGHFAEALSLYDRAIALSPGNAAFRSNRAAALTALGRFAEAVRECEEAVRLDSNYVRARQRLASLFLRLGQVENARKHLFCQGQPDPSELQKLQLVEKHINKCANVRRVGDWKCVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQINDAELILLTISKTESHSISSSQARFFGMLSDAYSFLVRAQIEMALGRFEDAVSAAEKASTIDPRNIEVAVLHKNVRMVARARARGNDLFKSERYTEACSAYDEGLRLDPSNAVLYCNRAACWFKLGLWERSLEDCDHALLIQSNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPDNNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFKAAISLPGVSVVHFEIESNSQCKQISPFVNTLCSRYPSINFLKVDIQKSPTVATAENVRIVPTFKIYKNGSRMKEIVCPSCDMLEQSVRHYSF 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0501 695 Gene3D Tetratricopeptide repeat domain 222 581 IPR011990 GO:0005515
Bisa12g0501 695 MobiDBLite consensus disorder prediction 115 149 - -
Bisa12g0501 695 MobiDBLite consensus disorder prediction 22 149 - -
Bisa12g0501 695 Pfam Tetratricopeptide repeat 419 448 IPR019734 GO:0005515
Bisa12g0501 695 Gene3D Glutaredoxin 588 694 - -
Bisa12g0501 695 MobiDBLite consensus disorder prediction 52 109 - -
Bisa12g0501 695 ProSiteProfiles TPR repeat profile. 415 448 IPR019734 GO:0005515
Bisa12g0501 695 CDD TRX_family 600 690 - -
Bisa12g0501 695 SMART tpr_5 461 494 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 367 400 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 258 291 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 224 257 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 529 562 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 415 448 IPR019734 GO:0005515
Bisa12g0501 695 SMART tpr_5 495 528 IPR019734 GO:0005515
Bisa12g0501 695 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Bisa12g0501 695 FunFam TPR repeat-containing thioredoxin TTL4 587 694 - -
Bisa12g0501 695 Pfam Tetratricopeptide repeat 230 290 - -
Bisa12g0501 695 Pfam Tetratricopeptide repeat 466 517 - -
Bisa12g0501 695 Pfam Thioredoxin 600 682 IPR013766 -
Bisa12g0501 695 SUPERFAMILY Thioredoxin-like 498 693 IPR036249 -
Bisa12g0501 695 SUPERFAMILY TPR-like 223 450 IPR011990 GO:0005515
Bisa12g0501 695 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 692 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0501 Bisa-ChrBisa12 7553517 7556679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0501 460 605 U-box Gene Family AT3G07370 29.508 4.22e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0501 12 7553517 7556679 Bisa02g2872 02 72955574 72958980 CCT
Bisa12g0501 12 7553517 7556679 Bisa12g0501 12 7553517 7556679 ECH