Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0493 ATGTCTCTGATGAAAGTTTTCCGGTCTCGTAAATTCTCCAGATCCTTCAAGGAGGCTAGAGTGCTGGAGGAAGACGAGGGCTGGAGCGGGATCGGTGCGGGCGACGCGGTGCAGTCCGGTCAGGACGCGGCGTACGGCAATGCGTGGTCCAATATGCTGCCGGAGCTGCTCGGGGAGATCATACAGCGAGTGGAGGCCAGCGAGAAGCAGTGGCCCCACCGCCAAAACGTCGTCGCTTGTGCTTGCGTGTGCAAGAGGTGGAGGGAGATGACCCGGGAGATCGTACGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCTTGCCTGAAACAGCCAGGACCACGTGATTCGCCCCACCAATGTATTATAAAGCGGAACAAGAAGACTTCAACATTTTACCTGTACCTCGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTGCTTATTCTGAATATATCATATCACTTGACGCAGATGACCTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTCCTTGGCACCAACTTCACAATCTATGACAGCCAGCCACCCCATAGTGGTGCTAAGCCATCAAGCAGCAGGTCCAGCCGCCGATTTGCCAGCAAGCAGATAAGCCCTCAAGTTCCTGCCAGAAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTCTGAAATCAAGGGGCCCAAGGAGAATGGCTTGCTGGATGAAGTGCCCCTCTCTGTTGTCAGGTGAGGGTTCGGATAGCAAAAATTGGGCTAGCGATAAGATGAACGATAAAGAACATGCTGCTTCTGGCTCAATTTTGAAAAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTTCACGGCCGTGTGACTGTAGCATCAGTGAAGAATTTTCAGCTGGTTGCTACAGTGGACCAGAGTCAGCCAGGTGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAATTTGGGAAGGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCCTTTGCCATTTGCCTAACTAGCTTTGGCACCAAACTGGCGTGTGAGTAA 1134 0.5097 MSLMKVFRSRKFSRSFKEARVLEEDEGWSGIGAGDAVQSGQDAAYGNAWSNMLPELLGEIIQRVEASEKQWPHRQNVVACACVCKRWREMTREIVRSPSQSGKITFPSCLKQPGPRDSPHQCIIKRNKKTSTFYLYLALTPSFTDKGKFLLAAKRYRRGAYSEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSSRSSRRFASKQISPQVPARNFEVGQVSYKFNLLKSRGPRRMACWMKCPSLLSGEGSDSKNWASDKMNDKEHAASGSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0493 377 PANTHER TUBBY-RELATED 30 375 - -
Bisa12g0493 377 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Bisa12g0493 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Bisa12g0493 377 MobiDBLite consensus disorder prediction 199 222 - -
Bisa12g0493 377 CDD F-box_AtTLP-like 49 93 - -
Bisa12g0493 377 Pfam F-box domain 49 96 IPR001810 GO:0005515
Bisa12g0493 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Bisa12g0493 377 Pfam Tub family 110 372 IPR000007 -
Bisa12g0493 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Bisa12g0493 377 Gene3D Tubby Protein; Chain A 105 377 IPR025659 -
Bisa12g0493 377 SUPERFAMILY Tubby C-terminal domain-like 98 377 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0493 Bisa-ChrBisa12 7451296 7455622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0493 1 377 TUB Transcription Factor Family AT1G53320 70.619 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa12g0493 Tub 2.8e-102 CL0395