LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0452	ATGGGAGAAAACCTCGAAGTGGAAGCTTTGAAAGATATAGCAGAAACACTGGGAAAGAAGGACTGGGACTACACTGTGGATCCATGCAGTGGTGAACGTAACTGGACATCGACAGTTCAGCAGGCATGTACACAAGCTAATGTGAACTTGTTTGCAAGCTCGTCAATGGGCAACAACTTAGGAATGCCTTATTGTTTGAGAAGCAGTAGCTGTCCTAAAACCTCATACTCTCTCCATATAAATTGTGGTGGGAAGACAGTAACAGTCAATGGAAGTAAAGTATACGATGATGATTCAGATGCAGCTGGACCTGCTCGATTCCACCTGCAGAGTGGATCAAACTGGGCATTTAGCTCCACTGGTTATTTCTTAGATAATGAACGTGCAGACTACTATACCTGGTCAAATACATCTAGGCTTTCTATGACCAACTCTGAACTGTACATGAATGCACGTGTTTCTCCCATTTCTCTGACTTATTATGGGTTTTGCCTGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCAGAAATAATGTTCACTGGTGATAAAACATATAATAGCCTAGGAAGGCGTGTGTTTGATGTCTACATTCAGGGAAAGAGGGTGCTGGAGAATTTTAATATAGCAGAAGAAGCAGGAGGCTCTGGTAAGGTGGTAACAAAACCATTCACAGCTGTTGTCACTAGTAATACCTTGGAGATTCGCTTATATTGGGCTGGAAAAGGGACAATTGCTATCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGATCCTGACTTTACGCCCCCTTCAGAAAATGGAAGTAGCATATCTGCAGGGGCTGTGGTTGGTATTGTGGCTGCAGGAGCAGTTACTGTCATCCTGGCATTGGGTATACTTTGGTGGAGAGGCTGTATAGGACACAAAAATTCGCTAGCAAATGATCTTAAGGGCTTGGATATGAAAACTGGTTTATTTTCCTTACGACAAATCAAAGCAGCAACCAACAACTTTGATGCTGCTAATAAAATTGGAGAAGGAGGATTCGGTCCTGTTTATAAGGGTATTCTGTCAGATGGAACAATAATTGCAGTTAAGCAGCTATCTGCCAAATCACGACAAGGAAATCGTGAATTTATAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCATGTCTGGTTAAGCTTTATGGTTGTTGTGTCGAAGGAGATCAGTTGATGCTAATATACGAATATATGGAAAATAATAGTCTTGCACGTGCTTTATTTGGCCGAGAAGAATCCCGATTAAAACTTGATTGGCCAACAAGACACAAGATCTGTGTTGGTATTGCTAGAGGTTTAGCTCACCTCCATGAAGAGTCAAGATTGAAGATTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATGAAAGTCTCAACCCCAAGATATCTGATTTTGGTTTGGCCAAACTTGACGAAGAGGATAATACACACATAAGCACTCGAATTGCTGGAACTTATGGATATATGGCTCCTGAATATGCCATGCATGGTTATCTGACTGAAAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGGAGGAGCAATACCTCTCACCGGGCAAAGGAAGAAGCATTTTATCTTCTTGATTGGGCACATCTCTTGAAAGATAAAGGAGAATTAATGGAGCTAGTAGATCCAAGGTTGGGTTCAGAATTCCACAAAGAGGAGGTAATGGTGATGATCAATGTGGCTCTCTTATGCACCAATGTGTCCCCAACGCTTAGGCCTGCTATGTCTTCAGTGGTAAGCATGCTTGAAGGCAGAACTGTAGTTGAGGAGGTTGTTTCGGAGCCAAGTGATGTATTTGATGAGAAGAAGTTGGAGGCAATGAGAAAGTATTACAGAGAGACGGAAGAAAATAAGATAACTGAGATTCAAAAGCAAAGTATATCAGAGGACGGGCCATGGACTGCTTCATCTACCTCAGCAGTAGATCTCTATCCTGTTCATTTGGACTCCTCTTATTGGGAGAAAAGAAACTAG	2055	0.4156	MGENLEVEALKDIAETLGKKDWDYTVDPCSGERNWTSTVQQACTQANVNLFASSSMGNNLGMPYCLRSSSCPKTSYSLHINCGGKTVTVNGSKVYDDDSDAAGPARFHLQSGSNWAFSSTGYFLDNERADYYTWSNTSRLSMTNSELYMNARVSPISLTYYGFCLGNGNYTVNLHFAEIMFTGDKTYNSLGRRVFDVYIQGKRVLENFNIAEEAGGSGKVVTKPFTAVVTSNTLEIRLYWAGKGTIAIPFRSVYGPLISAISVDPDFTPPSENGSSISAGAVVGIVAAGAVTVILALGILWWRGCIGHKNSLANDLKGLDMKTGLFSLRQIKAATNNFDAANKIGEGGFGPVYKGILSDGTIIAVKQLSAKSRQGNREFINEIGMISALQHPCLVKLYGCCVEGDQLMLIYEYMENNSLARALFGREESRLKLDWPTRHKICVGIARGLAHLHEESRLKIVHRDIKATNVLLDESLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGRSNTSHRAKEEAFYLLDWAHLLKDKGELMELVDPRLGSEFHKEEVMVMINVALLCTNVSPTLRPAMSSVVSMLEGRTVVEEVVSEPSDVFDEKKLEAMRKYYRETEENKITEIQKQSISEDGPWTASSTSAVDLYPVHLDSSYWEKRN	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0452	684	ProSiteProfiles	Protein kinase domain profile.	338	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0452	684	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	75	266	-	-
	Bisa12g0452	684	SUPERFAMILY	Protein kinase-like (PK-like)	321	625	IPR011009	-
	Bisa12g0452	684	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	307	413	-	-
	Bisa12g0452	684	Pfam	Malectin domain	77	261	IPR021720	-
	Bisa12g0452	684	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	33	640	-	-
	Bisa12g0452	684	Gene3D	Transferase(Phosphotransferase) domain 1	414	626	-	-
	Bisa12g0452	684	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	414	621	-	-
	Bisa12g0452	684	Gene3D	Phosphorylase Kinase; domain 1	307	413	-	-
	Bisa12g0452	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Bisa12g0452	684	Gene3D	-	73	265	-	-
	Bisa12g0452	684	SMART	serkin_6	338	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0452	684	CDD	STKc_IRAK	344	611	-	-
	Bisa12g0452	684	Pfam	Protein tyrosine and serine/threonine kinase	341	608	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0452	Bisa-ChrBisa12	6703814	6715602	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0452	36	669	Receptor kinase-like Gene Family	AT1G07650	58.669	0.0	738

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa12g0452		PK_Tyr_Ser-Thr	1.4e-47	CL0016