LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0450	ATGATTTGCTTACAATTGTGTACATTTAAGGGAAAGAGGGTGCTGGAGAATTTCAATATTGCAGAAGAAGCTGGAGGCTCTGGTAAGGCGGTACCAATTGCATTCACAGCTGTTGTCACTAATAATACCTTGGAGATTCGCTTATATTGGGCTGGAAAAGGGACAATTGCTATCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGATCCTGATTTTACTCTCCCTTTGGAAAATGGAAGTAGCATGTCTGCAGGGGTTGTGGTTGGCATTGTGGCTGCAGGAGCAGTTACTGTCATCCTGGCATTGGGTATACTTTGGTGGAGAGGCTGTAAAAGACATAAAAATTCGCTAGCAAATGATCTTAAGGTCTTGGATATGAAAACTAGTTTATTTTCCTTACGGCAAATCAAAGCAGCAACCAACAACTTTGATGCTGCTAATAAAATTGGAGAAGGAGGATTTGGTCCTGTTTATAAGGGTATTTTGTCAGATGGAACAATAATTGCAGTTAAGCAGCTATCTGCCAAATCACGACAAGGAAATCGTGAATTTATAAATGAGATAGGCATGATTTCTGCTTTGCAACACCCATGTCTGGTTAAGCTTTATGGTTGTTGTGTCGAAGGAGATCAATTAATACTAATATACGAGTATATGGAAAACAATAGTCTTGCACGCGCTTTATTTGGCCCAGAAGAATCTCGATTAAAACTTGATTGGCCAACAAGACTCAAGATCTGTGTTGGTATTGCTAGAGGTTTAGCTCACCTCCACGAAGAGTCAAGATTGAAGATTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTTGATGGAAGTCTCAACCCCAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGAGGAGAATACACACATAAGCACTCGAATTGCTGGAACTTATGGATATATGGCTCCTGAATATGCCATGCATGGTTATTTGACTGAAAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATTATTAGTGGGATGAGCAACACCTCTCACCAAGTGATGGAAGAAGCATTCTATCTTCTTGATTGGGCACATCTCTTGAAAGAAAAAGGAGAATTAATAGAGCTAATAGATCGAAGGTTGGGTTCAGAATTCAACAAAGAGGAGGTGATTGCGATGATCAATGTGGCTCTCTTATGCACCAATGTGTCCCCATCGCTTAGGCCTACCATGTCTTCAGTGGTAAGCATGCTTGAAGGTAGAACTGTAGTTGAGGAGGTTGTTTCGGAGCCAAATGAGGCATTGGATGAGAAGAAGTTGGAGGCAATGAGAGAGTATTACAGAGAGAGGGAAGAAAATAAGATAACTAATATTCAAAAGCAAAGTATATCAGAGGATGGACTATGGACTACTTCATCTACCTCAGCAGTAGATCTCTATCCTGTCCATTTGGACTCCTCTTATTGGATGAAAAGAAACTAG	1485	0.4034	MICLQLCTFKGKRVLENFNIAEEAGGSGKAVPIAFTAVVTNNTLEIRLYWAGKGTIAIPFRSVYGPLISAISVDPDFTLPLENGSSMSAGVVVGIVAAGAVTVILALGILWWRGCKRHKNSLANDLKVLDMKTSLFSLRQIKAATNNFDAANKIGEGGFGPVYKGILSDGTIIAVKQLSAKSRQGNREFINEIGMISALQHPCLVKLYGCCVEGDQLILIYEYMENNSLARALFGPEESRLKLDWPTRLKICVGIARGLAHLHEESRLKIVHRDIKATNVLLDGSLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIISGMSNTSHQVMEEAFYLLDWAHLLKEKGELIELIDRRLGSEFNKEEVIAMINVALLCTNVSPSLRPTMSSVVSMLEGRTVVEEVVSEPNEALDEKKLEAMREYYREREENKITNIQKQSISEDGLWTTSSTSAVDLYPVHLDSSYWMKRN	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0450	494	CDD	STKc_IRAK	154	421	-	-
	Bisa12g0450	494	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	9	450	-	-
	Bisa12g0450	494	Gene3D	Transferase(Phosphotransferase) domain 1	224	437	-	-
	Bisa12g0450	494	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Bisa12g0450	494	Pfam	Protein tyrosine and serine/threonine kinase	151	419	IPR001245	GO:0004672\|GO:0006468
	Bisa12g0450	494	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	117	223	-	-
	Bisa12g0450	494	Pfam	Malectin domain	9	71	IPR021720	-
	Bisa12g0450	494	SMART	serkin_6	148	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0450	494	ProSiteProfiles	Protein kinase domain profile.	148	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g0450	494	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	224	431	-	-
	Bisa12g0450	494	Gene3D	Phosphorylase Kinase; domain 1	112	223	-	-
	Bisa12g0450	494	Gene3D	-	8	75	-	-
	Bisa12g0450	494	SUPERFAMILY	Protein kinase-like (PK-like)	133	427	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0450	Bisa-ChrBisa12	6636943	6641376	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0450	14	479	Receptor kinase-like Gene Family	AT1G07650	60.897	0.0	568

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa12g0450		PK_Tyr_Ser-Thr	5.6e-48	CL0016