Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0386 ATGGCTGCGGTTGGAGAGATTTTTGGTGATGCAGCAGCTGACAACAAATTGGACTCAAAACCGAAGCCCGAGAACGAAGTCAATGTGCAGAAGCTTTTTGATATGTTCACAAAGTTGAATCCTTTGGCAAAGGAGTTTATCCCGCCATCCTATTCTCATCATGATCATCGTTATCTGAGCTATAATCAGTTATCTCCCAACAATTTTCTGGTCAACAATAAGCCCTCTGATAGTGACAATTACCCAAACAACCGAAGGAGAAGAAATAATTTCAGTCAAGGTAGAAGGCTGAATGGAAAAGTGCACAAAGCTCAGAGAGAAGACAGCATTAGAAGAACTGTATATGTTTCAGATATTGATCAGCATGTTACTGAGGAACGGCTTGCTGCTTTATTTATCAGTTGTGGGCAAGTGATTGATTGTCGAATTTGTGGTGATCCACATTCAATCCTTCGATTTGCATTCGTGGAGTTTTCAGATGAGCGGGGTGCGAGAGCAGCTCTAAACCTTGGTGGCACTGTGCTCGGTTACTATCCAGTTAGGATCCTTCCTTCAAAAACTGCCATCCTTCCTGTGAACCCTACATTCCTGCCTAGGTCAGAAGATGAGCGGGAAATGTGTAGCAGAACTGTCTATTGTACAAATATTGAGAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGTGGTAAGGTTACACGCTTGAGGCTTTTAGGGGATAATGTGCATTCAACGCGAATTGCTTTTGTGGAATTTGTAATGGCAGAAAGTGCCATACTTGCCCTAAATTGTAGTGGAATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCGAAGACACCTGTGAGGCCGCGCTCGTCCAATATCACACTGACTGATCCAAATGGTCCATTACTTACCAGAGGCGATTCAGTCAACTTTGCAGCTGAGAGAAGTGTGGACTGGAAGGGGTGA 969 0.4345 MAAVGEIFGDAAADNKLDSKPKPENEVNVQKLFDMFTKLNPLAKEFIPPSYSHHDHRYLSYNQLSPNNFLVNNKPSDSDNYPNNRRRRNNFSQGRRLNGKVHKAQREDSIRRTVYVSDIDQHVTEERLAALFISCGQVIDCRICGDPHSILRFAFVEFSDERGARAALNLGGTVLGYYPVRILPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIEKKVSQAEVKNFFETACGKVTRLRLLGDNVHSTRIAFVEFVMAESAILALNCSGMLLGTQPIRVSPSKTPVRPRSSNITLTDPNGPLLTRGDSVNFAAERSVDWKG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0386 322 MobiDBLite consensus disorder prediction 71 103 - -
Bisa12g0386 322 Gene3D - 197 293 IPR012677 -
Bisa12g0386 322 Gene3D - 71 188 IPR012677 -
Bisa12g0386 322 CDD RRM2_CID8_like 205 286 IPR034825 -
Bisa12g0386 322 SUPERFAMILY RNA-binding domain, RBD 85 188 IPR035979 GO:0003676
Bisa12g0386 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 285 IPR000504 GO:0003723
Bisa12g0386 322 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 291 - -
Bisa12g0386 322 CDD RRM1_CID8_like 110 189 IPR034823 -
Bisa12g0386 322 SMART rrm1_1 210 281 IPR000504 GO:0003723
Bisa12g0386 322 SMART rrm1_1 113 183 IPR000504 GO:0003723
Bisa12g0386 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Bisa12g0386 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Bisa12g0386 322 FunFam Polyadenylate-binding protein-interacting protein 10 203 281 - -
Bisa12g0386 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Bisa12g0386 322 FunFam Polyadenylate-binding protein-interacting protein 11 78 189 - -
Bisa12g0386 322 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Bisa12g0386 322 SUPERFAMILY RNA-binding domain, RBD 199 294 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0386 Bisa-ChrBisa12 5388786 5393061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0386 109 266 Eukaryotic Initiation Factors Gene Family AT1G34140 24.224 1.04e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0386 12 5388786 5393061 Bisa12g0386 12 5388786 5393061 ECH