Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0379 ATGATTGACCAACGGCTGAAAACGCTAGAAACAGAAGGAGAGGGAAAAAAGGGCCGAGAGAGCGATGCGATTGCGGTGGTCGTGGTGGCTTTGCTACTGCTGCTCAGGGTTTATCGCTCCGACGACGACGGCGTCCAATGCACCGGAGCACGCGGCGGAAGGTCGTCGTCGTTGATGGCCTTGCAATTGCAGATGACTTGGCTGCCGAGTCTTCTCACTCAGAAGCGCACGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTACACTCCTCCCCTTGCCAATTTCTGCCTTCGCAACCAGCACTCTTCCTTTTGCGATTCTGCTTCGGAGGACAGGAAGCGGGACTGCCCTTTTTGTCTACTAGAGAAGCGGATTGTTCGTTCTTTGAGAGTGGATCTTGCCCAAGACGCCCCTTTGAAGATCCAGAGCTGTCTCAGGATTTTTGCCGAGCACTTTCGGTGCGGGCGTCAAGAGGATGCCCATGAATTCTTAAGGTACGTCATTGACGCCTGCCACAACACTTGCCTTCGCCTCAAGAAGCTGAGGCGCAAGGGAGGCGATACTGCCGTCAATGGAAGTGGCAATACTGTGGTTAAGGAGATATTTGGGGGGGCCTTGCAGAGCCAGGTGAAGTGTCTCTCTTGTGGCTACGAATCCAATAAGGTGGATGAGATTATGGACATTAGTCTTGATGTTTTGCATAGTAATTCGCTTAGAGATGCTATGCAAAAGTTCTTTCAGCCCGAGGTTTTAGATGGTAACAATAAGTACAAATGTGAGAATTGTAAGAAATTGGTGGCGGCTAAGAAACAGATGTCTATACTTCAAGCACCTAATGTCCTTGTAATGCAACTTAAGAGATTTGAGGGCATATTGGGTGGCAAAATTGACAAGCCTGTTGCATTTGAAGACGTTCTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCATTACCAGAATATAAGCTCTTTGGTACTATTGTCCATTCAGGATATTCCCCAGAATCGGGCCATTATTATGCTTATATTAAGGATGCAAAGGGCCGGTGGTATTGTTGTGATGATTCTTCTGTATCACTTGCAACCCTGAAAGAGGTTTTGTCAGAAAAGGTTTACATACTTTTTTTTTCTCGTACTAACCAAAGGCCAGTGCCAATTAGTAATGGTTTTACTTCAAACGGTTTAAAGTCTCATCACTCTAATGGAGGTCAGGCATCTGAATGCCCAAAAATTGATGTGCCACTGAAAGCGGTGCATTCAAAATCAGATTCCCAGCAATCTCTTTGGAAGGGCATGCCAAGATTGTCTAAGATTGGTAAAGAACTTTCTAGCCCACGGGTGAAGTTTAACTTTAATGGAAATTCTACTTCCAAAAGATGTCCTGAAGGTGTCAATGGGAAAGTTGACTCATTCAACCAGCCTGCTGTGACAAATGGGTATATGAAGGACTCAGTTTCTTTGGAGAATTCTAATAATGATACTTCATCAATTAGGAATGGCTTTGAAAAAACCAAAGTTGGTGCTGTTGACAACTCGAAAAGGAAGGAATCAGTGTTAACAAATAAGAACACTGGTATTCAGTCTATTGATAAATATGCTGGAAAATCTGATCCTATGGAAGACACTGGTAGAAGCAGGGCAATAACAGGTAAAGGACCTGAAAACCATAATATAGAAAGCAATGGTCTCAACAGCAAACCTAAAACATTGGGGAATAAGAGAAAGAAGCTGGATGCTACTTGCATTTTACTTGCACATGATGATCAGTCTCAAGCAAGAGTTCAAGAACTGAAAGACATACTTGAGAAAGAGGCCAAATCAGTTTTGAGATCATGTGGCTGGACAGATAAGGTCCATGGCTTTATGTCTTCTCGAAAGAGGTTACGTGCACAAGAAGTAGGGAATTCATCAAGTGAAGATGAAATAAAGAAGTTGTTAACAAGTGATGCCAAGGGAGCTTTCATATCACAGATACCCGAGTCATTAAAAGAGGATCTGATTGACCGTCTCCGATTATTTAGTGAAGAAAAAATATGA 2085 0.4427 MIDQRLKTLETEGEGKKGRESDAIAVVVVALLLLLRVYRSDDDGVQCTGARGGRSSSLMALQLQMTWLPSLLTQKRTTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNQHSSFCDSASEDRKRDCPFCLLEKRIVRSLRVDLAQDAPLKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDTAVNGSGNTVVKEIFGGALQSQVKCLSCGYESNKVDEIMDISLDVLHSNSLRDAMQKFFQPEVLDGNNKYKCENCKKLVAAKKQMSILQAPNVLVMQLKRFEGILGGKIDKPVAFEDVLVLSSFMCKASQDPLPEYKLFGTIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYILFFSRTNQRPVPISNGFTSNGLKSHHSNGGQASECPKIDVPLKAVHSKSDSQQSLWKGMPRLSKIGKELSSPRVKFNFNGNSTSKRCPEGVNGKVDSFNQPAVTNGYMKDSVSLENSNNDTSSIRNGFEKTKVGAVDNSKRKESVLTNKNTGIQSIDKYAGKSDPMEDTGRSRAITGKGPENHNIESNGLNSKPKTLGNKRKKLDATCILLAHDDQSQARVQELKDILEKEAKSVLRSCGWTDKVHGFMSSRKRLRAQEVGNSSSEDEIKKLLTSDAKGAFISQIPESLKEDLIDRLRLFSEEKI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0379 694 SUPERFAMILY Cysteine proteinases 76 394 IPR038765 -
Bisa12g0379 694 Pfam Ubiquitin carboxyl-terminal hydrolase 82 392 IPR001394 GO:0004843|GO:0016579
Bisa12g0379 694 MobiDBLite consensus disorder prediction 570 584 - -
Bisa12g0379 694 CDD Peptidase_C19E 81 393 - -
Bisa12g0379 694 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 57 398 - -
Bisa12g0379 694 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 83 98 IPR018200 GO:0004843|GO:0006511
Bisa12g0379 694 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 82 395 IPR028889 -
Bisa12g0379 694 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 337 355 IPR018200 GO:0004843|GO:0006511
Bisa12g0379 694 FunFam Ubiquitin carboxyl-terminal hydrolase 25 76 397 - -
Bisa12g0379 694 Gene3D Cysteine proteinases 75 397 - -
Bisa12g0379 694 MobiDBLite consensus disorder prediction 564 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0379 Bisa-ChrBisa12 5276460 5284306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0379 81 399 Miscellaneous Gene Families AT2G24640 37.730 1.71e-60 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0379 12 5276460 5284306 Bisa12g0379 12 5276460 5284306 ECH