Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0340 ATGGGAACTCTGTTGAATACGGTGTCTCCTCCTGCAACCCTATTATCAAAATCAAAAGGAAAGGGTTGTTTTAGCTTGTATTCCCAGATTCCAAACATCCATGGGGTTTCCCTAAAGAAGGTTTTTCCCAGAGTTTTGGCTTCTGCCCAGATTACTATTTCTCCAAAAGATGCTGTTTTTACTTTGCCCAACTGGAGGGCTGGGAAGAATGACCCAAAAAGTAAGGAGCTTAGGCTAAATGATGCATTTCTTTATTTAGAGTATATGGTGGGCAAAGGCCACAAGCCTGAAGTAGCTCAAGCAACCCAGCTTTTGTATGATCTTTGCAAGGCTAATAAACTGAGAAAGTCTGTTAGAGTGATGGAGATGATGATGGGTTCTGGTATTATACCTTATGCAGCTTCCTGTACATATTTGGTCAATCATTTGTGCAAGAGAGGGAATGTTGGGTATGCAATGCAATTGGTTGAAAAGATGGAAGAACATGGGTTTCCAATTAATACTATTACCTATAACACTCTAGTTAAAGGACTTTGCATGCAGGGAAATTTAAACAAGAGCATGCAGCTTTTAGATAAATTAAGAAAGAAGGGGTTGGTCCCCAATGCATTCACATATTCTTTCTTACTCGAAGCTGCTTACAAGGAGAGGGGAGTAGATGAAGCCATGAAACTTTTGGATGACATAATTGCCAAGGGTGGAGAACGAAATTTGATTAGTTACAATGTTTTGTTGACTGGGTTGTGCAAGGAAGGCAGAACTGAAGAAGCTTTTAAGCTTTTCAGGGAATTGCCTGCGAAGGGGTTTAATCCTAGTGTTGTGAGTTATAACATTTTGCTGAGGAATTTGTGCTACGAAGGGCGGTGGGAGGAAGCAAATGAGCTATTAGCAGAGATGTATGGAGAGGATCGGTCTCCCTCTGTGGTTACCTACAACATATTGATTACATCTCTTGCCCTTCATGGAAGAATAGAACATGCTTTCAAGGTTTTGGATGAAATGACAAGGAGTGGATTCAAGGCCACTGCAACTAGCTATAATCCAATTATTGCCCGTCTCTGCAAGGAAGGGAAGGTGGATCTTGTAGTTCAATGTCTAGACCAAATGATTTACCGGCACTGTAGTCCTAACGAAGGAACATACAACGCCATTGCTATGCTTTGTGAGGAAGGGAAAGTGCAAGAGGCATTCTCCATATTCCAAAGTTTGGGTAATAAGCAAGACTCCTCTATGCATGATTTCTACAAAAGTGTGATTTGGAGCATGTGTAGGAAAGGGAACACATATCCAGCCTTTCAGATATTATACGAAATGACGAAGTATGGATTTACACCAGATTCTTATACTTACTCGTCTTTGATAAGAGGAATGTGTAGAGAAGGAATGTTAGATGGTGCCATTGAAATATTCAGGGTTTTGGAAGAAACTGGGTACAGGCCTGATGTTGATAACTATAATGCACTCATACTTGGATTCTGCAAGTCGCTAAGAACAGACTTCGCAGTGGACATACTTCAAATGATGATTGATAAAGGATGTATGCCTAATGAGACAACATATACCATTCTCGTTGAAGGCCTTGTTTTTGAGGAAGAAATGGATATGGCAGCCAAGCTTTTAAAAGAGCTATATTTAAAGGAGGTTCTGAGCCATGGTACTGTGGAGAGACTTATTATGCAGTATGACCTCAAGGACTTAGCAGTTTAG 1707 0.406 MGTLLNTVSPPATLLSKSKGKGCFSLYSQIPNIHGVSLKKVFPRVLASAQITISPKDAVFTLPNWRAGKNDPKSKELRLNDAFLYLEYMVGKGHKPEVAQATQLLYDLCKANKLRKSVRVMEMMMGSGIIPYAASCTYLVNHLCKRGNVGYAMQLVEKMEEHGFPINTITYNTLVKGLCMQGNLNKSMQLLDKLRKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGERNLISYNVLLTGLCKEGRTEEAFKLFRELPAKGFNPSVVSYNILLRNLCYEGRWEEANELLAEMYGEDRSPSVVTYNILITSLALHGRIEHAFKVLDEMTRSGFKATATSYNPIIARLCKEGKVDLVVQCLDQMIYRHCSPNEGTYNAIAMLCEEGKVQEAFSIFQSLGNKQDSSMHDFYKSVIWSMCRKGNTYPAFQILYEMTKYGFTPDSYTYSSLIRGMCREGMLDGAIEIFRVLEETGYRPDVDNYNALILGFCKSLRTDFAVDILQMMIDKGCMPNETTYTILVEGLVFEEEMDMAAKLLKELYLKEVLSHGTVERLIMQYDLKDLAV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Bisa12g0340 568 Gene3D Tetratricopeptide repeat domain 410 474 IPR011990 GO:0005515
Bisa12g0340 568 Gene3D Tetratricopeptide repeat domain 475 546 IPR011990 GO:0005515
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat family 344 383 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat family 480 527 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat family 237 284 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat family 167 212 IPR002885 -
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 345 378 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 169 203 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 448 482 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 135 167 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 485 517 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 274 307 IPR002885 -
Bisa12g0340 568 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Bisa12g0340 568 SUPERFAMILY TPR-like 129 401 IPR011990 GO:0005515
Bisa12g0340 568 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 79 227 - -
Bisa12g0340 568 Pfam PPR repeat 305 335 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat 442 471 IPR002885 -
Bisa12g0340 568 Gene3D Tetratricopeptide repeat domain 73 183 IPR011990 GO:0005515
Bisa12g0340 568 Gene3D Tetratricopeptide repeat domain 286 409 IPR011990 GO:0005515
Bisa12g0340 568 Gene3D Tetratricopeptide repeat domain 184 285 IPR011990 GO:0005515
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Bisa12g0340 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Bisa12g0340 568 Pfam PPR repeat 135 164 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0340 Bisa-ChrBisa12 4600924 4602630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0340 76 565 Glycosyltransferase AT1G05670 25.502 2.73e-49 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0340 12 4600924 4602630 Bisa12g0340 12 4600924 4602630 ECH