Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0329 ATGGTTTTATTTCCTTCAGCAGCCTCCATCAGCAATGAAACAATAAGCTTAATGGGAATGGCAATGGTGATTCACTCCTCACTAGGGTTTATCGAGGGTTTCGATTTCGCTTGCTGTGCCCTAACAATGGCGAAGCCTGGGCGAGGTCGTCGCTCACCACCGTCAGGTTCCGTTTCGGGCTCGTCCTCTCGGTCTAGGTCCACCTCACCCTCCGATTCCCGCTCCAGCTCTCGCTCCCGCTCCGTTTCGCGCTCGCCCTCTCGCTCCAGATCCTTCTCTTCGTCATCTTCTCTGTCTCGCAGTGTCAGTTCCCGAAGCCGTAGCCTAGGCCCACCTTCTCAAAGGAGAAAAAGTCCTGTTGAAGCAGCTAGGCGAGGTAGATCACCTCCACCCCAATCTAAAAGGTCTCCTCCACCCCAATCTAAAAGGTCTCCTCCACCCCAATCTAAAAGGTCTTCTCCACCCCCAAGGAAACCTTCTCCTATTCGTGAGTCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCAACGAGGGCCATTTGAAAGAAATATTCAGTAATTTTGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATACGTGGAATTCAAGACAAGAGGCGATGCTGAAAAAGCCTTACTATTCATGGATGGTGCCCAAATAGATGGAAACATTGTTAAGGCGAGATTTACCCTACCTCCAAGACAGAAGGTTTCGCCACCCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGATGCTCCTAGGACTGATAATGCTAGTGCTGATATCGAAAAGGATGGGCCAAAGCGGCCAAGAGAATCTCCTCGGAGAAGACCACCTTCGCCACGAAGGAGATCTCCTGTACCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTGTTCGTCGTCGATTGGACTCTCCTCCTTATCGTCGCGGAGATACACCTCCAAGGAGGAGGCCTGTCTCTCCTGCTAGAGGTCGTTCTCCATCTCCACCAAGGCGCTTAAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGTCCAGCTCGCAGACGTTCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGAGTTCGCAGTCCTCCTAGAAGGTCTCCAATCAGCCGCAGGCGCAGTCGCTCTCCAATACGTAGGTCTGCACGCTCACGTTCAAGATCCTTCTCACCACGGAGAGGACGACCACCTGTGAGACGTGGAAGGTCATCATCCTACTCTGATTCCCCAAGTCCACGCAAGGTATCCCGGAAATCAAGGAGCCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGCAGCAACAGCAGCAGCAGCAGTTCACCGCCTCCACCCCGCAAACCATAG 1407 0.5245 MVLFPSAASISNETISLMGMAMVIHSSLGFIEGFDFACCALTMAKPGRGRRSPPSGSVSGSSSRSRSTSPSDSRSSSRSRSVSRSPSRSRSFSSSSSLSRSVSSRSRSLGPPSQRRKSPVEAARRGRSPPPQSKRSPPPQSKRSPPPQSKRSSPPPRKPSPIRESLVLHIDKLSRNVNEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLFMDGAQIDGNIVKARFTLPPRQKVSPPPKASAVAPKRDAPRTDNASADIEKDGPKRPRESPRRRPPSPRRRSPVPRRVGSPRRPDSPVRRRLDSPPYRRGDTPPRRRPVSPARGRSPSPPRRLRSPARVSPRRMRGSPARRRSPPPRRRSPPRRVRSPPRRSPISRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRKSRSRSPRRPLRGRGSSNSSSSSSPPPPRKP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0329 468 FunFam Serine/arginine-rich splicing factor SR45 140 251 - -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 351 419 - -
Bisa12g0329 468 SMART rrm1_1 167 240 IPR000504 GO:0003723
Bisa12g0329 468 MobiDBLite consensus disorder prediction 54 113 - -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 307 333 - -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 131 161 - -
Bisa12g0329 468 CDD RRM_RNPS1 168 240 IPR034201 -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 287 302 - -
Bisa12g0329 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 244 IPR000504 GO:0003723
Bisa12g0329 468 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 320 438 - -
Bisa12g0329 468 Gene3D - 54 250 IPR012677 -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 266 286 - -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 243 468 - -
Bisa12g0329 468 MobiDBLite consensus disorder prediction 45 163 - -
Bisa12g0329 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Bisa12g0329 468 SUPERFAMILY RNA-binding domain, RBD 135 250 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0329 Bisa-ChrBisa12 4506609 4513952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0329 168 241 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 1.89e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0329 12 4506609 4513952 Bisa12g0329 12 4506609 4513952 ECH