Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0271 ATGGACCAACAAACTCTCATAGACCAAAACTTTCCACTCTTTGCTAAATCTCGTAAACCCTCCAAAAACCCCTCGCCGGCCGTCACAACCGCCGCCGCCGCCAACACAACCACCACCAAGGACCCTAATTTGGATATCCCGCACCTTGAAAAGTGGAAAGAGACGGATACCGATTCCACGAATCTCACAACTTTCGCGGAGCTTGGACTCGCCGAATGGGCGGTGAAAACGTGCAAGGAGCTTGGAATGCGCAAACCCCGGCGAATCCAATCCCAGTGCATCCCGAAGATTCTCGAAGGCCGTCACGTGCTCGGTATCGACGAGACGGGTAGTGGTAAGACTGCAGCATTTGCTCTGCCGATTCTTCACCGCCTGGCCGAGCATCCCTTTGGGGTTTATGCGTTGGTTGTGACACCGACCAGAGAGTTGGCGTACCAGCTGGCGGAGCAATTCAGGGCATTGGGTTCGTGCTTGCATGTGCGGATAGCCGTGGTGGTTGGGGGGATGGACATGCTGAAACAAGCCAAGAGTTTGATGTCCAGGCCGCATGTTGTGATTGGCACACCAGGGAGGATCAAGGTTTTGCTCGAGGAAAATCCTGATATTCCTCCTGTTTTTTCTAAAACTAAGTTCCTTGTCTTGGATGAAGCTGATAGAGTTCTTGAGGTTGGCTTCCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCAGAAACACGGCAAAATCTATTCTTTTCTGCAACTACAACAAGTAATCTACAGAAGTTGCTTGCACGTTACAAAGATAAGCTTTATGCTTACGAGGCCTATGAAGGCCTGAAAACAGTTGAGACTCTTAGGCAACAGGTTATATTTGTCCCCAAAAAAGTGAAGGAGGTTTATTTAATGTATATATTGTCCAAAATGGAAGACATGGGCATTCGCTCTGCCATTGTATTCATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAATTTTCAGCTTTGTATTCATTTAAGTCACAGACTCAGAGGCTTGAAGCACTTCATCAGTTTAAATCAGGAAAGGTTTCTATAATGCTTGCTACTGATGTTGCCAGCCGTGGGTTGGATATTCCTACAGTTGATCTAGTTATCAATTATGATGTTCCAAGGTTTCCAAGAGATTATGTTCATCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGAGGATTGGCACTGAGCATTGTCACCCAGAATGACATTGATCTCATTCGTGAAGTAGAAGCTCTTCTTGAAAGGCAGCTTGAATTGGTTGAATACAAAGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTGGCAGAAATGAAAATGGTGGATGATGGCTTTGAGGAGAAAGCGAAAGAGCGAAAAAAGCAGAAACTGAGAGTGCTAGCAGAGAAAGGATTGTTGAAGAAAAGGAGCAAAAAGCGGAAGAGAAATAAAGGCCATGAGAAGGAAGGTCGTTTGAAAAGAAAAAGCATCATTCCTTCATAG 1536 0.4525 MDQQTLIDQNFPLFAKSRKPSKNPSPAVTTAAAANTTTTKDPNLDIPHLEKWKETDTDSTNLTTFAELGLAEWAVKTCKELGMRKPRRIQSQCIPKILEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVYALVVTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLKQAKSLMSRPHVVIGTPGRIKVLLEENPDIPPVFSKTKFLVLDEADRVLEVGFQEELKFIFQCLPETRQNLFFSATTTSNLQKLLARYKDKLYAYEAYEGLKTVETLRQQVIFVPKKVKEVYLMYILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEFSALYSFKSQTQRLEALHQFKSGKVSIMLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSIVTQNDIDLIREVEALLERQLELVEYKENEVLSLMKKVFSAKNVAEMKMVDDGFEEKAKERKKQKLRVLAEKGLLKKRSKKRKRNKGHEKEGRLKRKSIIPS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0271 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 63 91 IPR014014 GO:0003724
Bisa12g0271 511 CDD SF2_C_DEAD 279 411 - -
Bisa12g0271 511 MobiDBLite consensus disorder prediction 480 511 - -
Bisa12g0271 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Bisa12g0271 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 420 IPR027417 -
Bisa12g0271 511 Coils Coil 419 439 - -
Bisa12g0271 511 MobiDBLite consensus disorder prediction 22 43 - -
Bisa12g0271 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 441 IPR001650 -
Bisa12g0271 511 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Bisa12g0271 511 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 39 503 - -
Bisa12g0271 511 Pfam Helicase conserved C-terminal domain 307 402 IPR001650 -
Bisa12g0271 511 MobiDBLite consensus disorder prediction 483 500 - -
Bisa12g0271 511 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Bisa12g0271 511 MobiDBLite consensus disorder prediction 16 43 - -
Bisa12g0271 511 Gene3D - 265 441 IPR027417 -
Bisa12g0271 511 Gene3D - 32 264 IPR027417 -
Bisa12g0271 511 SMART helicmild6 321 402 IPR001650 -
Bisa12g0271 511 SMART ultradead3 82 282 IPR014001 -
Bisa12g0271 511 CDD DEADc_DDX49 65 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0271 Bisa-ChrBisa12 3753177 3758738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0271 64 415 Eukaryotic Initiation Factors Gene Family AT3G13920 33.239 2.99e-55 189