LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0236	ATGAGATGGAGGAGGAAGAAGAGGAAGAAGAAGCTGAAAGGAGGAGGTTCACAGGCTCTGTTTTCACGCTAGACATGGCAAGATAAGCTTAGAGAAGGGAGGTTATCTAGGAAGGTGACTTCTTGTTTGATACGGAGTTCTGCGATCGCTGTCTCAGCGGCTATACTTACTATCCGATACTGCAAACAACGAAGGAAGCTTCGTAGCAACAACCGGAAAGAGGAGAGCAGGGAAATGACGTTAGCTTTCACAGCAAATAGCTTACGCTTGGCAATGGGATCGTGGAAGCTTGCTTCTCGCCCTTCACATTTGCTACACATGCAGGCGACCACCCCTTCCTTCACTCGCCAGATAAGCATGGATGCAAAGAGTGTTGCTTCTCAGCTTAATAGTGCTGGTCTGTTGAGGACTCAGGGTCTTATTGGAGGGAAATGGATTGATGCCTACGACGGTAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTGTAGCAGATATCGCATGCATGGGTGGAAAAGAGACAAATGATGCCATTTCTTCAGCCTATGATGCATTTAAATCTTGGAGCAAAACCACTGCTGCCGAGAGGAGCAAACTTCTGAGAAAATGGTATGACTTGCTAATGGCACACCAAGAAGAGATTGCACAACTTGTAACCTTGGAGCAAGGAAAGCCTCTTAAAGAATCTACTGCTGAGGTAAACTATGGGGCTAGTTTTATTGAGTTTTCAGCTGAGGAGGCAAAGCGAGTATATGGGGATATTATTCCTGCACCTCTATCTGATCGACGATTGTTTGTTTTAAAGCAGCCTGTAGGGGTTGTTGGTGCAATCACACCTTGGAACTTTCCTCTGGCTATGATTACCCGGAAGGTTGGCCCAGCCCTTGCATGCGGCTGTACAGTGGTTATAAAGCCATCTGAACTTACTCCTCTCACCGCTTTGGCTGCAGCACAGCTTTCTATTCAAGCTGGAATACCAGCGGGTGTTGTAAATGTGGTGATGGGGAATGCTCCTGATATTGGGGACGCTATACTTGCGAGTCCACAGGTAAGGAAGATCACATTTACTGGCTCAACAGCAATTGGAAAGAAATTGATGGCAGGTGCTGCTGGAACAGTTAAAAAAGTATCTCTGGAGCTTGGTGGCAATGCACCTTGCATAATATTTGATGATGCGGATCTTGATGTGGCTGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATCGAATTCTTGTGCAAGAAGGTATCTATGAGAAATTTGCAAATGCTGTCCTTCAAGCTGTTAAGAGTATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGGTTCAGGGACCTCTAATCAATGAAGCTGCTGTGGAAAAGGTTGAGTCCATACTTCAAGATGCCACCGAAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGGCATAGCCTTGGATTAACTTTTTATGAACCAACGGTCGTTACTGATGTCAACAATGAGATGCGCATATCAAGAGAGGAAGTATTTGGACCTGTTGCTCCCCTTTTGAGATTTAAAACTGAAGAGGAGGCTATCAGAATTGCTAATGACACTAATGCAGGGTTGGGTTCATATATATTTACAAACAATGTTCAGCGCTCATGGCGCGTTGCTGAGGCTCTTGAGTACGGACTTGTGGGTGTCAATGAAGGAGTAATTTCGACAGAGGTGGCTCCATTTGGTGGTGTTAAACAGTCTGGCCTTGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTGGAGATGAAGTATGTCTGCTTGGGAAACATGAACAGAGACTGA	1839	0.4481	MRWRRKKRKKKLKGGGSQALFSRXTWQDKLREGRLSRKVTSCLIRSSAIAVSAAILTIRYCKQRRKLRSNNRKEESREMTLAFTANSLRLAMGSWKLASRPSHLLHMQATTPSFTRQISMDAKSVASQLNSAGLLRTQGLIGGKWIDAYDGKTIKVYNPATGESVADIACMGGKETNDAISSAYDAFKSWSKTTAAERSKLLRKWYDLLMAHQEEIAQLVTLEQGKPLKESTAEVNYGASFIEFSAEEAKRVYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAQLSIQAGIPAGVVNVVMGNAPDIGDAILASPQVRKITFTGSTAIGKKLMAGAAGTVKKVSLELGGNAPCIIFDDADLDVAVKGTLAAKFRNSGQTCVCANRILVQEGIYEKFANAVLQAVKSMKVGDGFSEGVVQGPLINEAAVEKVESILQDATEKGAKVILGGKRHSLGLTFYEPTVVTDVNNEMRISREEVFGPVAPLLRFKTEEEAIRIANDTNAGLGSYIFTNNVQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGNMNRD	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0236	612	FunFam	Succinate-semialdehyde dehydrogenase I	384	573	-	-
	Bisa12g0236	612	FunFam	Aldehyde dehydrogenase, putative	576	602	-	-
	Bisa12g0236	612	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	151	598	IPR016162	GO:0016491
	Bisa12g0236	612	SUPERFAMILY	ALDH-like	134	610	IPR016161	GO:0016491
	Bisa12g0236	612	Pfam	Aldehyde dehydrogenase family	145	604	IPR015590	GO:0016491
	Bisa12g0236	612	CDD	ALDH_F5_SSADH_GabD	156	606	-	-
	Bisa12g0236	612	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	384	573	IPR016163	GO:0016620
	Bisa12g0236	612	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	380	387	IPR029510	GO:0016491
	Bisa12g0236	612	FunFam	Succinate-semialdehyde dehydrogenase I	151	394	-	-
	Bisa12g0236	612	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	408	419	IPR016160	GO:0016491
	Bisa12g0236	612	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	131	609	-	-
	Bisa12g0236	612	NCBIfam	succinate-semialdehyde dehydrogenase	156	602	IPR010102	GO:0009013\|GO:0009450

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0236	Bisa-ChrBisa12	2963817	2988454	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0236	89	611	Aldehyde Dehydrogenase Gene Family	AT1G79440	77.481	0.0	828