Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0222 ATGACTCAGCCATCGGTGACTCCGCCGCCGTTGGCACCGCCGCACCCGCCGCCGTCCCCCGCCGGCCAAGGCTTGCAAGTGCGCTGCGCTGGTTGCCGCATGATCTTGACGGTGGCGCCGGGGCTGACGGAGTTCGCTTGCCCTACCTGTCGAATGCCGCAGATGCTGCCCCCGGAGCTCATGAGTAGGGCCCACCAGAAGCCGGCTCATCCCCCGCCTCTGCCTCCGGTATCTCAGCAGTCGCAATTGCCGGCCCATGGTATTGATCCCACTAAGATCCAGCTTCCCTGTGCTAGCTGCAAGGCCATCCTCAATGTGCCTCATGGTCTCGCGAGGTTCGCTTGCCCGCAATGTGGGGTTGACCTCGCCGTCGATATCTCTAAGGTGAAGCAGTTCTTCTCTTCTGGTCCTGCTCCCGAGGAAGTTAACGAGCTTGCTGTTGAAGTGGAGCGTGATGAAGATGAAGGTGGCCTAGTTGGAGAAACATTTACAGATTATCGGCCACCAAAACTATCCATTGGACCCCCACACCCAGATCCTGTTGTGGAAACATCTTCTTTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCTACAATTAAAGATTATTTGGAAACTTCAAAGGCTTTGTCATGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAGCACCTCCCTGATAATGCCAGGGCAGGATTCTTTATTGGGGATGGAGCTGGTGTAGGTAAAGGTAGAACAATTGCAGGGCTAATTTGGGAGAACTGGTACCACGGAAGGAGAAAAGCACTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGGAGAGACTTGGATGATGTGGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCGAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTTGACATACAATAGCCTCATAGCATCATCTGAGAGAGGTCGTTCTCGTCTCCAACAGCTTGTGCAATGGTGTGGGCCAGGGTTTGATGGTCTTATCATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTACCTGAATCCGGTAGTCAGCCAACACGAACAGGTGAAGCAGTGCTTGATATCCAGGCTCGACTACTTGAGGCTAGAGTTATTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGGTTATATGGTACGGCTTGGTCTTTGGGGAGCTGGGACTTCTTTCTCTGACTTTCGTGAATTTCTAGGTGCTCTTGATAGAGGAGGTGTTGGAGCACTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTACTTATGTCGGACACTTAGCTACAAAGGTGTTGAGTTTGAAGTTATTGAAGCACCGTTAGAAGATCAAATGATGGATATGTATAAAAGGGCAGCAGAATTTTGGGCAGAATTACGAGTGGAATTGCTGTCAGCCAGTGCCTTCCTAAATAATGAGAAACCTAGTTTTAGTCAGTTGTGGCGATTATACTGGGCTAGCCATCAGCGGTTTTTTAGACATATGTGTATGTCTGCCAAAGTTCCTGCTACTGTGAGACTAGCAAAGCAAGCGCTAATGGAAGATAAGTGCGTGGTCATTGGCCTTCAGAGTACTGGAGAAGCGAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTCGTTTCTGGTCCTCGGGAATTGCTGCTAAAATTTGTGGAAGAAAACTATCCATTGCCAGAAAAGCCTGAACTTCTCCCAGGAGAGGATGGTGTAAAAGAGCTCCAAAGGAAAAGGCACTCAGCAACTCCTGGTGTTTCTGTAAAAGGAAGGGTTAGAAAACTAGCTAAGTGGCAACCTCCTAGTGATGCTGAGAGTGATGAAGAATCTGAAACTGACTCTGCTCTTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAGATTTGCAATACTGAGGAGGAAGGGAAAAAATTGCTCAAGTGTTCCTGCTGTGGTAAATTGGTCCATTCAGCATGCTTGATGCCCCCAATTGATGATTTAGTTCCTGAGGAATGGTCATGTCATTTATGCAAGGAAAAAACAGATGAATATCTTCAAAAAAGACAAGCCTATATAACTGAACTCATGAAGAGGTATGATGCAGCGTCGGAGCGCAAGACAAAAATATTGAACATTATTCGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTATTGACCAGCTAGGAGGACCTGATAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTGGTGGGAAAGGTGTAACCTATCAGGCTCGTAATACAAAGGATATCACTATGGAGATGGTTAACATGCATGAGAAGAAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATCATCTCTGAAGCTGGATCAGCCGGTGTTTCTTTGCAGGCAGATAGAAGAGCTACAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCTTGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACCCATCGCTCAAATCAAGCTTCAGCCCCAGAATACAGGTTACTCTTTACTAATCTTGGTGGTGAAAGGCGGTTTGCATCAATTGTTGCTAAGAGACTAGAATCTCTTGGTGCTTTGACTCAAGGGGACCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCTTATGGAAAGAGAGCTCTGATGATAATGTACAAAGGGATAATGGAGCAGGATTCTCTGCCAGTTGTACCACCAGGATGTATATCTGACAGACCAGATACAATCCAAGATTTTATTATTAAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTCAGGGACACTATCCTAGGTAATGGTAAAGATTTTGGAAAGTTATCTGGTCGCATCATTGATTCTGATATGCATGATGTTGGACGATTTCTCAACAGGCTTTTGGGGCTGCCTCCTGAGATTCAGAATAGGTTATTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCAGAATGCTCGAATTGAAGGTAATCTTGATACTGGCATTCTTGACTTGAGAGCTAATGTTGTTGAACTGCAAGGGACTCCAAAGACAGTCCATGTCGATCATCTGACTGGGGCTTCAACTGTTCTGTTTACGTTCATCTTGGATCGTGGGATCACATGGGAGTCTGCGAGTAACATGCTGAATGAAAAGCAAAAGGATGGGCTCGGTTCGGCTAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTGGCATTTGAAAGTTCTGCTTCTGGTCTCTATAAGATAGTTCGTCCTCCGGTTGGAGAGTCCCTTCGGGAGATGAACCTAGCAGAATTGAAAAGTAAATATAGGAAAGTTTCATCTTTAGAAAAGGCTCAAACTGGTTGGGAAGACGAATATGAAGTTTCATCTAAACAGTGTATGCATGGTCCCAATTGTAAGCTTGGCAACTTCTGTACAGTTGGCAGAAGACAACAGGAAGTAAATGTCTTAGGTGGCCTAATTCTTCCGGTGTGGGGAACCATAGAGAAGGCCCTATCTAACCAGGCCCGCCAAAGCCATAGGAGGCTACGTGTTGTGCGCATAGAAACTACTACAGATAACCAACGTATAGTTGGCCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAAGGTTTAGCATGGGTACAAGAAATCGATGATTGA 3768 0.4551 MTQPSVTPPPLAPPHPPPSPAGQGLQVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMSRAHQKPAHPPPLPPVSQQSQLPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCGVDLAVDISKVKQFFSSGPAPEEVNELAVEVERDEDEGGLVGETFTDYRPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDPTIKDYLETSKALSCLQIETLVYACQRHLQHLPDNARAGFFIGDGAGVGKGRTIAGLIWENWYHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFLTYNSLIASSERGRSRLQQLVQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLDIQARLLEARVIYCSATGASEPRNMGYMVRLGLWGAGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYKGVEFEVIEAPLEDQMMDMYKRAAEFWAELRVELLSASAFLNNEKPSFSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALMEDKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKLAKWQPPSDAESDEESETDSALESTDSDDEFQICEICNTEEEGKKLLKCSCCGKLVHSACLMPPIDDLVPEEWSCHLCKEKTDEYLQKRQAYITELMKRYDAASERKTKILNIIRSLDLPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRAAGGKGVTYQARNTKDITMEMVNMHEKKLFMDGKKLVAIISEAGSAGVSLQADRRATNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCISDRPDTIQDFIIKAKAALVSVGIVRDTILGNGKDFGKLSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSILDLLVQNARIEGNLDTGILDLRANVVELQGTPKTVHVDHLTGASTVLFTFILDRGITWESASNMLNEKQKDGLGSANDGFYESKREWLGRRHFILAFESSASGLYKIVRPPVGESLREMNLAELKSKYRKVSSLEKAQTGWEDEYEVSSKQCMHGPNCKLGNFCTVGRRQQEVNVLGGLILPVWGTIEKALSNQARQSHRRLRVVRIETTTDNQRIVGLLVPNAAVETVLQGLAWVQEIDD 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0222 1255 PANTHER STRAWBERRY NOTCH-RELATED 24 1249 IPR026741 GO:0006355
Bisa12g0222 1255 MobiDBLite consensus disorder prediction 621 650 - -
Bisa12g0222 1255 Pfam PHD-finger 656 704 IPR019787 -
Bisa12g0222 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 905 IPR027417 -
Bisa12g0222 1255 SUPERFAMILY FYVE/PHD zinc finger 648 709 IPR011011 -
Bisa12g0222 1255 Gene3D - 205 406 IPR027417 -
Bisa12g0222 1255 SMART PHD_3 656 702 IPR001965 -
Bisa12g0222 1255 MobiDBLite consensus disorder prediction 1 21 - -
Bisa12g0222 1255 MobiDBLite consensus disorder prediction 634 650 - -
Bisa12g0222 1255 MobiDBLite consensus disorder prediction 63 82 - -
Bisa12g0222 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 715 IPR013083 -
Bisa12g0222 1255 Pfam P-loop containing NTP hydrolase pore-1 176 476 IPR039187 -
Bisa12g0222 1255 ProSiteProfiles Zinc finger PHD-type profile. 654 704 IPR019787 -
Bisa12g0222 1255 ProSitePatterns Zinc finger PHD-type signature. 657 701 IPR019786 -
Bisa12g0222 1255 MobiDBLite consensus disorder prediction 1 23 - -
Bisa12g0222 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 419 IPR027417 -
Bisa12g0222 1255 Pfam C-terminal domain on Strawberry notch homologue 745 1034 IPR026937 -
Bisa12g0222 1255 FunFam Protein strawberry notch homolog 2 207 407 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa12g0222 AAA_34 1.3e-131 CL0023