Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0190 ATGGACTCCCCTCTCTTCCCTCAATCCGACGGACACCCGTTTCCCTCTTCCCTTTCCCTCTTCGACACCCCCTATCTCCACCACCTAATCCAGCACCACCTCATTCCATCCGACGCCGACGACGACTACGCCAACGACGACGAGCAAAACGAGGATGTTTTAGAAGACTCGCTATCTTTTCTCTCCCCACTACCTAACTCCCGAAACCCTTGCTCTGATTCTATACCCACTATTCTAGTTACCTCCTCCATTCTGTCGCAGCTTGACCCAGGAGGGGTTTTGTGTGCGATTTGCAAGGACCCAATTGGGGTGAACGCTGAGGCTAAGCAGCTTCCGTGTAAACATTTGTACCACTCCGATTGCATTACGCCTTGGCTGGAGCACCATAATTCGTGCCCGCTTTGCCGGTTTCAGCTCGCCGGTGAGCAAGACGATGGTGTTTCTCAAGCGAGGAGAATAAGGAGGCAATTGAGAACTGCAATGATGAGGTTGTCTGAATTGATGGAAGGGGAGGATGATTTCTATGGGTTGAGGACTACTCTGAGTCACATTGCTAACCACGGAAGCTGA 570 0.5158 MDSPLFPQSDGHPFPSSLSLFDTPYLHHLIQHHLIPSDADDDYANDDEQNEDVLEDSLSFLSPLPNSRNPCSDSIPTILVTSSILSQLDPGGVLCAICKDPIGVNAEAKQLPCKHLYHSDCITPWLEHHNSCPLCRFQLAGEQDDGVSQARRIRRQLRTAMMRLSELMEGEDDFYGLRTTLSHIANHGS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0190 189 SUPERFAMILY RING/U-box 94 139 - -
Bisa12g0190 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 151 IPR013083 -
Bisa12g0190 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 139 - -
Bisa12g0190 189 SMART ring_2 95 135 IPR001841 -
Bisa12g0190 189 ProSiteProfiles Zinc finger RING-type profile. 95 136 IPR001841 -
Bisa12g0190 189 Pfam Ring finger domain 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0190 Bisa-ChrBisa12 2338695 2339344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0190 20 177 C3H Transcription Factor Family AT3G60080 36.810 3.04e-23 92.4