LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g0183	ATGGAGCTTGATTTGAACCAGGAGCCTTTGGACCAAACCCCTATATCAGTGATTGGATTTGATTCTATATTGGATGAGCTAGAATCTACGCATGGACGTATAGAAGAGCGTATTAGGCACCTTGAAGCAGTAACCTCCAGAGCCAGGCAACGTCAGAGATGGCGACGCAGTCACAATCCAGTTGGATTAAATAACATTATAGCGGATGTGATGACACCTAGTGCTCAAAATGAAGGCAGGATGCTCCGGGAGTACACTGGTACTGCTGTTCAAGAAAGAACGGTTGTTTTAACAGAATTGACAACAGCTAATGCTCATAATGAAGGCAGGATGACCCAGGAAGAGGCTGGTGTTGCTGTCCAAGAAAGACCAATCGACAATGGGAGAACAGGCAAAAGGAATAGTTCCCATTTAGTTGCTAAAGCCTTGGGGATGGACCCATTTATCAATGAGGTTGCAGAAAGCGACACTGGGAATTTTTTTGATTGTAATATCTGCTTGGACATGGCAAGGGATCCTATTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCATGCTTCTATCAAGTGTCATGTGAATATTCAACTGTAAGGGAATGCCCTTATTGTAAAGGAGAGGTTGCGGAAACAGGCATTATTCCAATTTATGGCAATAAAGATGTTCCTAGCAACTCTCAGTTGAAATTAAAAGAAGCTGGTTTGACAATTCCTCCTCGGCCCAAAGCACCTAGAATTGAGAGTCTTAGGCAGCAGCTCATAAGCCGGGGAGCATCTTCCTCTACCATCCAGGATAATAGGCGGTATAATCAATTTCTTGGTCTGACTGCAACTGATAGAACTCGTTTCCCACCCAATCAATCTCGCCATTCCCGTTCCCAAGTGTTTCCAGAATTGGAGACAGAAAACAGCCGACATAATCGTTCAGAGCAGCTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTCTCATCCCTCTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCGTCCTCAACAACCTCAACCGGTAGGAAGACTCACAGAGTTACTTGATCCTCTTCATCATAGTAGAGATACGTCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACATAATCCAGATGTGGCTCCAACCAATTCTGCAGCAACATCTTTTCCTCCTCTAGTTGTAAACAATGAAGCCACTGCTGTAATAGATTCGGGAATCCGGACAACAGATAGCAGTGTACAGACTAATTCAACTGAGCCTTCTTTATCTTCCAGTAGAACTGATGTGTTAGGACTTCCAGACCTTCACAATAGAGTTTCAAATGGGCGCAGAAGGAGAAGGTTAAGAAGATGA	1380	0.4377	MELDLNQEPLDQTPISVIGFDSILDELESTHGRIEERIRHLEAVTSRARQRQRWRRSHNPVGLNNIIADVMTPSAQNEGRMLREYTGTAVQERTVVLTELTTANAHNEGRMTQEEAGVAVQERPIDNGRTGKRNSSHLVAKALGMDPFINEVAESDTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSCEYSTVRECPYCKGEVAETGIIPIYGNKDVPSNSQLKLKEAGLTIPPRPKAPRIESLRQQLISRGASSSTIQDNRRYNQFLGLTATDRTRFPPNQSRHSRSQVFPELETENSRHNRSEQLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIRPQQPQPVGRLTELLDPLHHSRDTSSSIAATNQSGRHNPDVAPTNSAATSFPPLVVNNEATAVIDSGIRTTDSSVQTNSTEPSLSSSRTDVLGLPDLHNRVSNGRRRRRLRR	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g0183	459	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	116	308	IPR045103	GO:0005783\|GO:0006511\|GO:0061630
	Bisa12g0183	459	MobiDBLite	consensus disorder prediction	414	459	-	-
	Bisa12g0183	459	SMART	ring_2	163	203	IPR001841	-
	Bisa12g0183	459	MobiDBLite	consensus disorder prediction	276	306	-	-
	Bisa12g0183	459	ProSiteProfiles	Zinc finger RING-type profile.	163	204	IPR001841	-
	Bisa12g0183	459	MobiDBLite	consensus disorder prediction	368	400	-	-
	Bisa12g0183	459	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	139	247	IPR013083	-
	Bisa12g0183	459	MobiDBLite	consensus disorder prediction	276	293	-	-
	Bisa12g0183	459	SUPERFAMILY	RING/U-box	156	212	-	-
	Bisa12g0183	459	Coils	Coil	24	44	-	-
	Bisa12g0183	459	MobiDBLite	consensus disorder prediction	414	439	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g0183	Bisa-ChrBisa12	2245302	2246681	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g0183	151	378	C3H Transcription Factor Family	AT3G58030	35.379	8.30e-31	121