Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0182 ATGGAGCTTGCTTTGAGCTTAGGAGATCACGCTTCTTCAAAGCCTTCTGATCCAGCTTCCCACCGTCTGGGATTAGGCTTCAACACCACCTTGTCAATCGGTCCCATTTCTACCAAACCATCAAATCAACGACGACATGAACGAGAACCAGAAGCAGAGGAAGCAGCCAAAATCCATAAGGAAAAACAGAGTATTGAAGAGCGAGAGGATACAATAACTGAATACGTACAGCTTGATCTTCTTCCTCGCACGCCTGTCGTTGTTTCTCGCACTACCCCACCTTCTCAAATCTCATATCCATGGCCTCCCTCTGAAAATGGGTTCGACGTGAACAGATTGCCGGCGGCGCCGGAGGAGGACGAAGCGGCGGTGTCGTCTTCTCCGAACAGCGCAGCGTCGTCGTTTCAGATGGATCTATCTATGTACAACAGAGGAGGGAGTATCAGTGGTTGCAAGAGAGATTCCGATGGAGAAGCTTATTATGATCAAAGGGCTGCTTCTTCAAGAGCAAGCGACGAAGATGACAACGTTGGAAATACCAGGAAGAAGCTAAGGCTGACCAAAGAACAATCTGCTTTCCTCGAAGAGAGCTTCAAAGAACACAGTACTCTTAACCCAAAACAAAAGCTTGCTCTTGCAAAACAACTCAGTCTTCGGCCTCGTCAAGTAGAAGTCTGGTTTCAAAATAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTAGACTGTGAGTACTTAAAGAGGTGCTGTGAGACGCTAACTGAAGAGAACAAAAGGCTTCACAAGGAGCTTCAAGAGTTGAGAGCTTTGAAGACTAATTCAAATCCATTTTACATGCAATTACCAGCCACAACCTTGACTATGTGTCCCTCCTGTGAGAGAGTGGCCACCAATAATTCCACCCCCATTACTGCTTCTTCTGCAACTCCTTCTTCCTCCTTTGAACCCACCACTTCCAAAGCCATTGGATTCCCTGTGACCAAACCCAAGTTCTATCCTTTTGCCCACACCACCCAACCCCACCAGCCCACACCTTCTTGA 1041 0.4736 MELALSLGDHASSKPSDPASHRLGLGFNTTLSIGPISTKPSNQRRHEREPEAEEAAKIHKEKQSIEEREDTITEYVQLDLLPRTPVVVSRTTPPSQISYPWPPSENGFDVNRLPAAPEEDEAAVSSSPNSAASSFQMDLSMYNRGGSISGCKRDSDGEAYYDQRAASSRASDEDDNVGNTRKKLRLTKEQSAFLEESFKEHSTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLHKELQELRALKTNSNPFYMQLPATTLTMCPSCERVATNNSTPITASSATPSSSFEPTTSKAIGFPVTKPKFYPFAHTTQPHQPTPS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0182 346 MobiDBLite consensus disorder prediction 167 184 - -
Bisa12g0182 346 Pfam Homeobox associated leucine zipper 237 271 IPR003106 GO:0006355|GO:0043565
Bisa12g0182 346 Pfam Homeodomain 181 235 IPR001356 GO:0003677
Bisa12g0182 346 Gene3D - 185 235 - -
Bisa12g0182 346 SUPERFAMILY Homeodomain-like 168 238 IPR009057 -
Bisa12g0182 346 CDD bZIP 230 269 - -
Bisa12g0182 346 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 318 - -
Bisa12g0182 346 CDD homeodomain 181 238 IPR001356 GO:0003677
Bisa12g0182 346 SMART halz 237 281 IPR003106 GO:0006355|GO:0043565
Bisa12g0182 346 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Bisa12g0182 346 MobiDBLite consensus disorder prediction 23 40 - -
Bisa12g0182 346 MobiDBLite consensus disorder prediction 88 112 - -
Bisa12g0182 346 MobiDBLite consensus disorder prediction 1 68 - -
Bisa12g0182 346 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Bisa12g0182 346 Coils Coil 250 273 - -
Bisa12g0182 346 FunFam Homeobox-leucine zipper protein 18 166 242 - -
Bisa12g0182 346 SMART HOX_1 179 241 IPR001356 GO:0003677
Bisa12g0182 346 MobiDBLite consensus disorder prediction 163 184 - -
Bisa12g0182 346 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0182 Bisa-ChrBisa12 2217426 2218750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0182 164 336 Homeobox Transcription Factor Family AT4G37790 63.068 1.94e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa12g0182 Homeodomain 1.9e-15 CL0123