Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0099 ATGCCATCCGCAACGACATCGTATTGGTGCTATAGGTGCAACCGTTTTGTTCGGCTCTTGCGGGCTCAGGCTCAGGACCACATGGCTTGCCCACACTGCGGAAGTGGCTTCATCGAAGAGATCCACACCAACGCATCATCGGACCCATTTCCATCTGCAGCCATGCCCATGTTCGTCCACGAACCTCAAAATTCCTTTAATTTGAGGAGACAAGGGTTCCGGCGAAGGCGCCGCAACGCCGGTGCGCGGTCTCCCTTCAATCCAGTAATCGTTCTCCGTGGGCCCGGCGATGGTGGTACCGCTGATGACGGTGGAGCTCATAGCTTCGAATTGTACTACGACGACGGAGATGGCTCTGGTCTCCGACCTTTGCCCCCGTCGATGTCGGAGTTCTTGCTGGGATCAGGCTTCGATCGGTTGTTGGAGCAGTTTTCGCAGATCGACGCGAACGGACTTGGGCGGCCGGAGAATCCGCCAGCGTCTAAAACGGCGATTGAGTCAATGCCGACTGTTGAGATTGTGGAGGATTATGTGAGTACAGATGCACACTGTGCCATCTGTAAAGAAGCATTTAAGCTGGGTTCGGAGGCGCGTGAAATGCCCTGCAAGCACATTTACCATTCGGATTGCATCGTCCCGTGGCTCTCGATGCGCAATTCTTGTCCTGTGTGTCGCAGCGCGTTGCCTTCGGATCCAAGCTCATTGGGAAGTGGAGTATCAGGGCAAATCGATGACGAAACGGTAGGATTGACGATATGGAGGCTACCGGGTGGAGGCTTCGCCGTGGGCAGGTTTCCCGGCGGCCGCGATGCGGCGGAGGGTAATTTACCAGTTGTATACACAGAAATGGATGGTGGGCTGAATGCAAATGGAGCTCAGAGAAGAACTTCTCGGGACACGAGGAGCATTAGAGTTAGCGAAAGTCGTGGATTGGGCAGAATATTTCGCAATTTCTTCTCATTCTTCGGGAGGCTTGGGTCTAGGTCAACTTCATCTTCCTCTTCTTACTCTGGTTCTGAGCTGGGTTCCATGAGTGGAAGCCTTAGACAATTGAGTAGGGTATTCAGTAGGAACTCCCGGAGGCGTAACAGAAATTGGGTCTTTGAAGATTGA 1113 0.5346 MPSATTSYWCYRCNRFVRLLRAQAQDHMACPHCGSGFIEEIHTNASSDPFPSAAMPMFVHEPQNSFNLRRQGFRRRRRNAGARSPFNPVIVLRGPGDGGTADDGGAHSFELYYDDGDGSGLRPLPPSMSEFLLGSGFDRLLEQFSQIDANGLGRPENPPASKTAIESMPTVEIVEDYVSTDAHCAICKEAFKLGSEAREMPCKHIYHSDCIVPWLSMRNSCPVCRSALPSDPSSLGSGVSGQIDDETVGLTIWRLPGGGFAVGRFPGGRDAAEGNLPVVYTEMDGGLNANGAQRRTSRDTRSIRVSESRGLGRIFRNFFSFFGRLGSRSTSSSSSYSGSELGSMSGSLRQLSRVFSRNSRRRNRNWVFED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0099 370 Pfam Protein of unknown function (DUF1117) 248 360 IPR010543 -
Bisa12g0099 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Bisa12g0099 370 FunFam E3 ubiquitin-protein ligase RING1-like 146 231 - -
Bisa12g0099 370 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Bisa12g0099 370 CDD RING-H2_RNF126-like 184 225 - -
Bisa12g0099 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 229 - -
Bisa12g0099 370 Pfam Ring finger domain 183 225 IPR001841 -
Bisa12g0099 370 SMART ring_2 184 224 IPR001841 -
Bisa12g0099 370 Pfam zinc-ribbon 6 41 IPR039525 GO:0061630
Bisa12g0099 370 SUPERFAMILY RING/U-box 164 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0099 Bisa-ChrBisa12 1367233 1368345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0099 123 238 C3H Transcription Factor Family AT5G01980 44.828 1.20e-27 111