Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0078 ATGGCCGAAACTCCTAGGAAGTCTCTTCGCTCTCCCACAAAATGCAAGCAGCAACCTCAATCGGATGCCAAATCCTCACTTACAGTAAGCCCCGTCACCCCGCAATCTCTAGCTCCTCGCAGGTCCACCCGCCGCAATTCGCTGGTCTTCGATCCGATCAGTCCTCAGAAACCTCTCGATTGCATTGATGAATATTCTGAACATTCACTGAAAACTCCAAATAAGGGCAAAACCGGGGAGTGTATGGATTTGAAGAGGTCTCGTCGATCAATTGATTATGCTGAAGAACCTACCAAAGATAAAGTGATAACCCGTAGAAATAAAAATAGGGAAAACAGTTCAATAAACAAATCTCTAAACAAAGAGAACAATGCTGCATCTTCAAAATGCTCAACATCTGCTGCAAGGAGTGGAAATTTGAAGTGGAGAAATGGTAAAGATTCAGCTGAAGTTTCTTTTGCTCCAGCATCTCCTGATCAGCCAGAAACTAAGAAGAGGAAGAGGGTTGATGAAGGAACGGTTGTCACTAGAGCTATGGCTGCAAGAATTGGGAAATCTGAGAAGGGGCAAAAGAGCTGCAGGTTGCCTCAGAGACGGGTGTATTATAAAAAAGTGGTATACGATGGGGGCGAGTTTGAAGTGGGTGATGATGTTTATGTGAAAAGGAGAGAAGACGCTGAATCAGATAACGAAGACCCTGAAGTGGAAGAATGTAGGTTGTGTTTTTGTTCTGGGGTTGATGTTATGATTGAGTGTGATGATTGTTTAAGTGGGTTTCATTTGAAATGTTTGACTCCACCACTCAAGGAGGTACCGGAAGGAGATTGGAGTTGTGGCTTTTGTGTGGCTAGTAAGATGGGTAGAGATGTCAACTTTCCGATGCCTCCGGAAGGTAAGAAGCTAGTTAGGACAATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCACATCGAAAGTTTATGGAAAGAAGTAGATGGTAGCTATTGGTGTCGGGTAAGGTGGTATGTGATTCCAGAAGAGACTGCTGTTGGGAGACAACCTCATAACCTGAGGCGGGAGCTATATAGAGCAAATGATTTTGCAGACATTGAGATGGAATCTGTCCTTAGACATTGCTTTGTCAAGACCCCCAAGGAATTTGCCAAGGCCGACAACGAGGGAGATGATATTTTCTTTTGTGAATATGAATATGACATTCATTGGCACAGTTTCAAGCGTCTTGCTGAGATTGACAATGACAAAGAGGATGGTGAAGCCAGTGACAGTGATGAAGATTGGGATCTTTGCAAGGAATCAGACTCTGATACAGAGGATGATGTTGAATACGAAGCAGAGAATATTAAAAATTCACAATCTCAGTTATCAGCAGTGCATGCATTAGCTGCAAATCTGCGCAAGGGACAGTTCTTCGGACTTGAAAAGATAGGTACCAAAAATATCCCACAGTTTGTAAGGACCCACAAACAGACTGATCTTGAAAGAGCAAAGGCTATGCTACTGTTGGCATCATTGCCTAAATCTTTGCCTTGTAGGAACAAAGAAATGGAGGAGATAACTTCATTCATAAAAGGTGCTATCTGTGATGATCAGTGTCTGGGACGTTGCTTGTACATCCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAAGAATTTGAGGTCTGAAGTTGATGCAGGTACAATAAGACCATATTGTTTTGTGGAGATTAATGGTCTGAAATTGGCAACTCCAGAAAATATTTATAGGGTCATATATGAGGCATTAAATGGGCATAGGGTCAGCTGGAAAAAGGCTCTTCACTTGCTGAATGAGAGATTTGTAGAAGGGAAGAAAACTGGACAAGAGGCTGACAGACCATGCATTCTGCTTATAGATGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTTTACAACATTCTTGATTGGCCTACTAAACCACATTCCAAACTAATTGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGTCGAATGGGCATCCAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCTTGAAGGGAATAGATGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCTGCAGAAATTGCAGATTATCGTATTAAGAAGCTAGTTTCAGATCCTGACTTAGCTTCTGCAGGAAAGGGACTCGTGGCTATGGCAGATGTTGAAGCTGCCATCCAAGAAATGTTCCAAGCTCCTCATATTCAAGTGATGAAAAGCTGTTCTAGACTAAGCAAAATCTTCCTGACAGCGATGGTGCACGAGCTTTATAAAACAGGAATGGGGGAAACCACTTTTGAGAAGTTGGCAATGACGGTGTCGTGCCTCTGTACCAGCAACGGAGAGCTGTTTCCCGGATATGATACGCTCCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGATTATTTTATGTGAAGCTGGTGCCAGGCACAGGTTGCAAAAATTGCAGCTCAACTTCCCCAGCGATGATGTCGCCTTTGCGCTGAGAAACTGCAAGGATTTACCTTGGCTGGCCAAGTATTTACTTTAG 2676 0.432 MAETPRKSLRSPTKCKQQPQSDAKSSLTVSPVTPQSLAPRRSTRRNSLVFDPISPQKPLDCIDEYSEHSLKTPNKGKTGECMDLKRSRRSIDYAEEPTKDKVITRRNKNRENSSINKSLNKENNAASSKCSTSAARSGNLKWRNGKDSAEVSFAPASPDQPETKKRKRVDEGTVVTRAMAARIGKSEKGQKSCRLPQRRVYYKKVVYDGGEFEVGDDVYVKRREDAESDNEDPEVEECRLCFCSGVDVMIECDDCLSGFHLKCLTPPLKEVPEGDWSCGFCVASKMGRDVNFPMPPEGKKLVRTMREKLLSSDLWAAHIESLWKEVDGSYWCRVRWYVIPEETAVGRQPHNLRRELYRANDFADIEMESVLRHCFVKTPKEFAKADNEGDDIFFCEYEYDIHWHSFKRLAEIDNDKEDGEASDSDEDWDLCKESDSDTEDDVEYEAENIKNSQSQLSAVHALAANLRKGQFFGLEKIGTKNIPQFVRTHKQTDLERAKAMLLLASLPKSLPCRNKEMEEITSFIKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMKNLRSEVDAGTIRPYCFVEINGLKLATPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGQEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLVSDPDLASAGKGLVAMADVEAAIQEMFQAPHIQVMKSCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCTSNGELFPGYDTLLQVGCKLGECRIILCEAGARHRLQKLQLNFPSDDVAFALRNCKDLPWLAKYLL 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0078 891 Gene3D - 301 491 IPR043151 -
Bisa12g0078 891 Pfam ATPase family associated with various cellular activities (AAA) 539 684 IPR003959 GO:0005524|GO:0016887
Bisa12g0078 891 MobiDBLite consensus disorder prediction 61 112 - -
Bisa12g0078 891 FunFam Origin recognition complex subunit 1 491 690 - -
Bisa12g0078 891 SUPERFAMILY FYVE/PHD zinc finger 226 286 IPR011011 -
Bisa12g0078 891 MobiDBLite consensus disorder prediction 11 50 - -
Bisa12g0078 891 FunFam Origin recognition complex subunit 1 687 779 - -
Bisa12g0078 891 Gene3D - 492 685 IPR027417 -
Bisa12g0078 891 ProSiteProfiles BAH domain profile. 293 410 IPR001025 GO:0003682
Bisa12g0078 891 MobiDBLite consensus disorder prediction 1 171 - -
Bisa12g0078 891 Gene3D - 686 779 - -
Bisa12g0078 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 291 IPR013083 -
Bisa12g0078 891 Pfam AAA lid domain 712 745 IPR041083 -
Bisa12g0078 891 SMART BAH_4 210 410 IPR001025 GO:0003682
Bisa12g0078 891 SMART AAA_5 534 688 IPR003593 GO:0016887
Bisa12g0078 891 MobiDBLite consensus disorder prediction 113 139 - -
Bisa12g0078 891 FunFam Origin recognition complex subunit 1 301 493 - -
Bisa12g0078 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 758 IPR027417 -
Bisa12g0078 891 ProSiteProfiles Zinc finger PHD-type profile. 235 284 IPR019787 -
Bisa12g0078 891 SMART PHD_3 240 282 IPR001965 -
Bisa12g0078 891 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 342 885 - -
Bisa12g0078 891 Pfam PHD-finger 241 282 IPR019787 -
Bisa12g0078 891 Pfam BAH domain 318 407 IPR001025 GO:0003682
Bisa12g0078 891 FunFam Origin recognition complex subunit 1 233 300 - -
Bisa12g0078 891 ProSitePatterns Zinc finger PHD-type signature. 238 281 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0078 Bisa-ChrBisa12 1184596 1192061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0078 2 890 Core DNA Replication Machinery Family AT4G14700 60.000 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa12g0078 AAA 1.3e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0078 12 1184596 1192061 Bisa12g0078 12 1184596 1192061 ECH