Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0077 ATGACGACGACCTCTTCCCAGGGGTATCATCAACCTTCGTCGATTGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTCGATGAAACCTACCTCAGTCACTGCTTCGCTCACACTGGCGAGGTAGTTTCCATCAAGATCATACGTAATAAAATCACTGGACAGCCTGAAGGGTATGGATTTGTGGAGTTTGTTTCCCATGCAGCAGCAGAAAGGATTTTGCAGACTTACAATGGGACACAAATGCCTGGAACAGAACAGACTTTCAGGTTGAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGATTTAGCACCTGATGTTACAGATTATCTTCTGCAGGAGACATTTCGAGCCCATTATCCATCAGTTAGAGGTGCCAAAGTGGTGACTGATCCTAATACCGGGCGCTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATAAGTGCCGCAACCCCAAAAAAGACCACTGGTTTTCAACAGCAATATGCCGCAGCTAAAGCAATATATCCGATCCCAGCATATACTACACCAGTAAATGCAGTTCCACCAGACTATGATATGAATAATACAACTATTTTTGTTGGTAATTTAGATCTTAATATCACAGAAGAGGAGCTGAAGCAAACCTTTTTGCAATTTGGGGAAATTGTATCTGCCAAGATTCAGGCTGGCAAAGGATGTGGTTTTGTACAATTTGTGACAAGAGCATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGAAAGACGATAGGTCAACAAGTGGTCCGAATTTCTTGGGGTAGAAGCCTGACTGCCAGACAGGACTTACCGGGTGGCTGGGCTCCACAGATGGATCCAAGTCAATGGACTGCCTACTATGGATATGGACAGGGCTATGAAGCCTATGCTTATGGGGCAGCTCATGATCCTTCATTGTATGCATATGGAGCATATACTGGTTACGCACAGTACCCCCAACAGGTCGAAGGTGCTCAAGACATGGCATCTATGGCTATGCCCAATATGGAGCAAAGGGAGGATTTGTATGAGCCCCTGGCTACACCTGACGTTGACAAGCTAAATGCTGCATACCTATCAGTTCATGGAAGTGCCATTTTAGGGCGATCCCTCTGGTTGAAAACCTCGCCATTCTTACAGCAAGCTTAG 1263 0.4584 MTTTSSQGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAIYPIPAYTTPVNAVPPDYDMNNTTIFVGNLDLNITEEELKQTFLQFGEIVSAKIQAGKGCGFVQFVTRASAEEAIQRMQGKTIGQQVVRISWGRSLTARQDLPGGWAPQMDPSQWTAYYGYGQGYEAYAYGAAHDPSLYAYGAYTGYAQYPQQVEGAQDMASMAMPNMEQREDLYEPLATPDVDKLNAAYLSVHGSAILGRSLWLKTSPFLQQA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0077 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Bisa12g0077 420 CDD RRM2_SECp43_like 111 190 - -
Bisa12g0077 420 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Bisa12g0077 420 FunFam polyadenylate-binding protein RBP45 212 308 - -
Bisa12g0077 420 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Bisa12g0077 420 SUPERFAMILY RNA-binding domain, RBD 104 200 IPR035979 GO:0003676
Bisa12g0077 420 Gene3D - 102 206 IPR012677 -
Bisa12g0077 420 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Bisa12g0077 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Bisa12g0077 420 Gene3D - 217 306 IPR012677 -
Bisa12g0077 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Bisa12g0077 420 SMART rrm1_1 20 95 IPR000504 GO:0003723
Bisa12g0077 420 SMART rrm1_1 113 187 IPR000504 GO:0003723
Bisa12g0077 420 SUPERFAMILY RNA-binding domain, RBD 209 329 IPR035979 GO:0003676
Bisa12g0077 420 Gene3D - 18 98 IPR012677 -
Bisa12g0077 420 CDD RRM1_SECp43_like 20 100 - -
Bisa12g0077 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Bisa12g0077 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Bisa12g0077 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Bisa12g0077 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Bisa12g0077 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0077 Bisa-ChrBisa12 1178352 1183168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0077 20 307 Eukaryotic Initiation Factors Gene Family AT1G71770 26.280 3.20e-26 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0077 12 1178352 1183168 Bisa12g0077 12 1178352 1183168 ECH