Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0051 ATGGATATGTCGTCAACCATCACTATCTCCGGCGGCGACTCCCACCTTGACACTCCAACATTAGAGAGGGAATCTCCTAGGCTCCTTCAATCCATTTCCGAGCACGGAGGTTATGCTTATGTCAGGATGGCGGTTCTGGCGGCCGCCGGTGACTTTCGCTCTGCTGAAGCAGCTCGTGAGATGGCATGGGAGCAGCTACACTCGGGACCCTGGCACTCCGTCCTCCCAGTGTGGCGGGATGCATACGCTATGGCCTGCCTTCACGTTGCCAAGTACCATTATAGCATTGGCGAGTTCAAGGACGCCCTGAGGGCTTTGGATATGGGACTCATCATGGGAGGGATGCTTCTAAGGAAGGACATAGACTCTGCTGTTAACAAAGTTTCGGAGAAGGCAAGCAATCTTAGGGTTTCTGAAGAAAGCTGTGGAAGCTTGGGGAATTACGAGCATTCACTTGATCATCGCCAACTTAATGACACTGAGGTGCTCCAACTTTTACCTGTCAAGTCCCTTTCACGTAAGACTGTGGAGAAGAGGTCCGCTCTGTCACTGGAAAGATTCCTAAAGGATTGTTACTTGTCTGGTTCCCCAGTTATTATCAGTGATTGTATGTCTCACTGGCCAGCCAAATCAAAATGGAATAACATAGATTATTTGAAAAAAGTTGCTGGTTACCGCACCATTCCTGTTGAGGTTGGGAAGAACTATTTATGTGCAGAGTGGAAGCAAGAGCTAATTACATTTTCAGATTTTCTTCAGCGGATTGAGTCCCACTGCACTTCTGGCGGTCCTACATACCTTGCTCAGCACCCATTATTTGATCAGATAACTGAGCTTCGCAAAGATATTTGCGTACCAGATTATTGTTTTGCTGGCGGTGGTGAGCTAAGATCTGTCAATGCTTGGTTTGGTCCTGCTGGGACTGTAACGCCATTACACCATGATCCACACCATAACATACTAGCTCAGGTTGTTGGAAAGAAATATATAAGGCTTTACCCTGCATCTTTGTCTGATGAACTGTACCCCTACACTGAATCCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGATATAGATGAAACGAAGTTTCCCAAGGTGCAAGACGTGGAATTTGTTGACTGTATCCTAGAAGAAGGCGAAATGCTATATATCCCGCCAAAATGGTGGCACTATGTCCGCTCTCTAACTATCAGTTTCTCGGTTAGCTTTTGGTGGAGCGAGGGTGGAACTGAAAGTTGA 1245 0.4691 MDMSSTITISGGDSHLDTPTLERESPRLLQSISEHGGYAYVRMAVLAAAGDFRSAEAAREMAWEQLHSGPWHSVLPVWRDAYAMACLHVAKYHYSIGEFKDALRALDMGLIMGGMLLRKDIDSAVNKVSEKASNLRVSEESCGSLGNYEHSLDHRQLNDTEVLQLLPVKSLSRKTVEKRSALSLERFLKDCYLSGSPVIISDCMSHWPAKSKWNNIDYLKKVAGYRTIPVEVGKNYLCAEWKQELITFSDFLQRIESHCTSGGPTYLAQHPLFDQITELRKDICVPDYCFAGGGELRSVNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSDELYPYTESMLSNSSQVDLDDIDETKFPKVQDVEFVDCILEEGEMLYIPPKWWHYVRSLTISFSVSFWWSEGGTES 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0051 414 ProSiteProfiles JmjC domain profile. 259 414 IPR003347 -
Bisa12g0051 414 MobiDBLite consensus disorder prediction 1 15 - -
Bisa12g0051 414 FunFam lysine-specific demethylase JMJ30 175 407 - -
Bisa12g0051 414 MobiDBLite consensus disorder prediction 1 20 - -
Bisa12g0051 414 SUPERFAMILY Clavaminate synthase-like 176 408 - -
Bisa12g0051 414 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 81 409 - -
Bisa12g0051 414 Gene3D Cupin 174 408 - -
Bisa12g0051 414 SMART cupin_9 250 414 IPR003347 -
Bisa12g0051 414 Pfam Cupin-like domain 186 409 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0051 Bisa-ChrBisa12 897073 900775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0051 170 407 Acyl Lipid Metabolism Gene Families AT3G45880 24.476 6.89e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa12g0051 Cupin_8 3.4e-49 CL0029