Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0040 ATGGACTCCGAGGATGATATGCACGACGCCAACGATGTGGAATCCCTCGATGACGATTTCTACAGCGGCGAGACTGAAGATGCTCCCATGGATTACTACAGCGAATATGATGATGAGGCCGATGATTACTTTGATGATGCTGATGATTCCGATAGGATTGAGTCCCGTCGCCCCGAGCAAAATTATACCATCCTGACGGAATCAGATATTCGACAAAGACAAGAAGATGACATCACGCGAGTAGCAGCAGTTCTTTCTATATCACGAGTTGCTGCAAGCATCCTACTTCGTCACTACAATTGGAGCGTGAACAATGTGCATGACGCATGGTTTGCTGATGAAGATCGCGTCCGCAAAACAGTTGGCTTGTTGGAAAGTCCTGTCGTTCAGTTTCCTGATGCTGGAGAGCTTACTTGTGGCATCTGTTTTGAAACTTATCCTCGTACACGGATAGAATCTGCTGCTTGTGGTCATCCTTATTGTATCTCATGCTGGGAAGGATATATTAGCACATCTATAAATGATGGCCCTGGATGTTTGATGCTGAGATGCCCTGATCCCTCTTGTTGTGCTGCCGTTGGTCAAGATATGATAGATCTGTTAGCATCTGATGAAGACAAGGAGAAGTATGCCCGATACCTTCTTAGGTCCTATATTGAAGATAATAAAAAGACCAAGTGGTGTCCTGCCCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAACTATGACGTTCCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAAGCTCATCGTCCTGTGGACTGTGGCACTGTTGCAAAGTGGATTTCGAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCGTGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAGGGATGCATGCACATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAGGCAGCAAAACAAGAGGGAGTGTATGATGAGGCTGAAAGAAGAAGAGAAATGGCAAAGAACTCGTTGGAAAGGTACACACATTATTACGAGCGGTGGGCCAGCAATCAATCTTCCAGGCAAAAAGCTCTAGCTGATCTACATCAAATGCAAACTGTGCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCTCAGCTTAAATTCATAACTGAGGCATGGCTACAGATTGTTGAATGTAGGCGAGTACTGAAGTGGACATATGCTTATGGGTACTATTTACCAGAGCATGAGCATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCTGAATCTGGTCTGGAGAGACTCCATCAATGCGCTGAAAAGGAATTACAGCAGTACCTTAATGCTGATGGCCCATCTAGAGAATTCAATGACTTCCGAACAAAGCTAGCTGGATTAACTAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTGGAGAATGGTCTATCTGATGTGGATAGTAATGGAGCTGCTACCAGTAAAGCAACAAGCTCAAAAAATGGTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAAGTACTCGAAGCAGCAGTTTAAGCAGAATGACTGACGATAACACATGGTCGTGCGAACATTGTACTTATGGAAATGCCAAATCTGCCTCCACTTGCCAGATGTGTCATCAACAGCGTTGA 1770 0.4475 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSEYDDEADDYFDDADDSDRIESRRPEQNYTILTESDIRQRQEDDITRVAAVLSISRVAASILLRHYNWSVNNVHDAWFADEDRVRKTVGLLESPVVQFPDAGELTCGICFETYPRTRIESAACGHPYCISCWEGYISTSINDGPGCLMLRCPDPSCCAAVGQDMIDLLASDEDKEKYARYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVPCLCSYSFCWNCTEEAHRPVDCGTVAKWISKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAATSKATSSKNGAGSSKGRGGRGKGSTRSSSLSRMTDDNTWSCEHCTYGNAKSASTCQMCHQQR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0040 589 SMART zf_4 564 588 IPR001876 -
Bisa12g0040 589 SUPERFAMILY RING/U-box 135 220 - -
Bisa12g0040 589 MobiDBLite consensus disorder prediction 522 562 - -
Bisa12g0040 589 CDD Rcat_RBR_ARI7-like 293 347 - -
Bisa12g0040 589 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Bisa12g0040 589 MobiDBLite consensus disorder prediction 1 48 - -
Bisa12g0040 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 223 IPR013083 -
Bisa12g0040 589 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Bisa12g0040 589 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Bisa12g0040 589 SUPERFAMILY RING/U-box 208 277 - -
Bisa12g0040 589 MobiDBLite consensus disorder prediction 547 562 - -
Bisa12g0040 589 Gene3D - 266 521 - -
Bisa12g0040 589 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Bisa12g0040 589 Gene3D - 560 589 - -
Bisa12g0040 589 ProSiteProfiles Zinc finger RanBP2 type profile. 562 589 IPR001876 -
Bisa12g0040 589 SMART ibrneu5 274 344 IPR002867 GO:0008270
Bisa12g0040 589 SMART ibrneu5 208 270 IPR002867 GO:0008270
Bisa12g0040 589 Coils Coil 349 376 - -
Bisa12g0040 589 CDD BRcat_RBR_ANKIB1 215 279 - -
Bisa12g0040 589 SUPERFAMILY RING/U-box 289 337 - -
Bisa12g0040 589 MobiDBLite consensus disorder prediction 522 540 - -
Bisa12g0040 589 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Bisa12g0040 589 MobiDBLite consensus disorder prediction 1 51 - -
Bisa12g0040 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 436 IPR031127 GO:0004842|GO:0016567
Bisa12g0040 589 CDD RING-HC_ARI6-like 136 197 - -
Bisa12g0040 589 Pfam IBR domain, a half RING-finger domain 289 335 IPR002867 GO:0008270
Bisa12g0040 589 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Bisa12g0040 589 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Bisa12g0040 589 Pfam Ariadne domain 357 518 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0040 Bisa-ChrBisa12 673188 679065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0040 17 589 ARIADNE family AT1G65430 70.890 0.0 847