Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0029 ATGCAGAACGTTAGAAAATGTCTTGAAATGAAAAAAGGAAGCAAAAGTGATGAGAGACTGCTTAGTACATCTGGTTGGGAACATCGTCTTCCTTTTTTTAGTAACCAAAGCAATGCTGTGGTTCTCTGGTCGTTCACATTCTCTCTTCTGTCTCTGCATTCTCATCAAAGATACCCACCAGTTTTGGTTGACTTATGGACAAAGAATTCGTCAAATTTGATAATTCTGAGAAATGGAGTTTGTTTTGTGATAGTATTAGTTTGCCAGTTTCTTGACTGTGACAAACTACAGGTTTATGCTCATTTAGAATTGTTTGATGGCGCAGGTGAGTGGAATGCCCATTTCCTCCAAAGGGAAAAGGAATTGGTGACATCTTCTCGAGCTCTTTCGAAGGGATCGATATCATTTGATTGTGGAGTGAGAAATTCAATTTTAGAGGATACGCTTAACAGCTTCTCCGAGCTCATGAATCTTGATCCTTATACTGGTTGGTGCTATAGCCCATCAACGACAGATCAGATTTTGGCTAATGGACTTTCAACATTTTCCTCGGTACCACATGCGTCACCTGATGAATTCGATTTAGTGGACCAGAGCAGTGTCTCAGTCTTTATGACTGATGTTGGTGGAAATTACAATGCCTTGAGAACTTCCTCCAATCATGGGGAGAAAGTCGTATTTCAGCAAATGGACGCTCCACTTGGGTTCTCAGATGATGCAAATTACTTAAATTCTAAACAACAAATACAGGGTTCTTCTCAACAATTTAAAACCTCAGATATGGGTAACGATATGATCTGCAGGCCACCATCATGTTCACTTGATGAGAGAATGCTGAGGGCTCTGTCCTTCTTCCGGGAATCTGCTGGTGGGAGAATATTGGCACAAGTTTGGGTACCCATAAAGCTTGGTGATCAATTCATCTTAAGCACCAGTGAGCAACCCTATTTGCTTGACCCAGTGCTTGCAGGATTTCGTGAAGTGTCAAGGACATTTAATTTCTCTGCAGAGGGAAAACCAGGTTCTTTTCTGGGACTTCCTGGTCGTGTGTTTATCTCTAAAGTTCCTGAATGGACTTCCAATGTTGGTTTCTACAATAAGAATGAGTACCTGAGGATGGAGCACGCAATCTATCATGAGGTTCGTGGATCAATGGCTGTTCCAGTGTTTGATCTCCACTCTGAAATGCCTTGCTGTGCTGTATTGGAACTTGTGACTACAACGGAAAAGCCTGGTTTTGATAGAGAATGGGAAATTTTTTGTCATGCGCTCCAGGTTGTTAATTTAAGGACTACTATGCCTCGCCGACTTCTTCCCAAGAGTCTCTTAAATAACAAAAGAGCTGGTTTAACCGAGATAACAGATGTGTTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGGTTCCCTGTTGTTACTCTCTGGGAAATAGAGATGAAACTATGAGAACACAAGTTAAAGAAGGCCATTTCTATTCCAGTGAGAAAGTTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATAAAGTGATGGAAGGATTTGTTCATGCCTGCGTTGAACATGATCTTGAGGAAGGGCAAGGTATTGCTGGGAAAGCTCTTCAATCAAGTCATCCATTCTTCTACCCTGATGTGAAGGCATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAATATAATTTGAATGCTGCAGTTGCAATCAAGCTAATGAGTACCCACACTAGTGATAATTACATATTAGAATTCTTTCTTCCAGTCAATGTGAGAGGGAGTTCAGAGCAACAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTATCAGGAATAGTAGGCTCACCAGAGATGCCCTTGATGCCATCTAACCTGAGATACGATGATTTTGATGCTGCTCATAACCAGGCAATGAGCGAATCAAGGAGGCAGGTCAAGAAAAAGAGGAATACAGTGCAGAAGAATATCAGCTTCAATGTTCTCCAGCAACACTTCTCTGGTAGATTAAAGGATGCTGCAAAGAGCATTGGTGTTTGTCCTACAACCCTGAAAAGAATATGCAGGCAACATGGCATTTCAAGATGGCCATCCTGTAAGATTAATAAATTGAATCGCTCATTGAAGGATATACAGGATGTGCTTGACTCCGTTCAGGGAGTGGAAGGAGGGTTAAAATGTGACCCTTCCAGGGAGGAGTTTGTTGATGGAGGTTCAATCATCCAAGTATTTAATGCACGTGGAAGCCTTCTGTTCCGTGAGAAAAGTATGCATGTAAAGGAACCTGCACAAGATACAGTCTCGGTATCTCCAGCATCTTCTAGTGAAGGTGAGAATTCAGCAGTTGAGTTGGAGGATGATCTTGTAAATTTGGTGAGAAACCAGCTTGTTCACTCAAGAAGTGTGCTTATTCCTAATTCTTGTGAGAGACAATGGATGAAAGCCACTGCCTCTTCTGTTGATTGTAATAGAGATTCAAAATCAATGGCCATGGTTGACAGATCATCCTAG 2568 0.4147 MQNVRKCLEMKKGSKSDERLLSTSGWEHRLPFFSNQSNAVVLWSFTFSLLSLHSHQRYPPVLVDLWTKNSSNLIILRNGVCFVIVLVCQFLDCDKLQVYAHLELFDGAGEWNAHFLQREKELVTSSRALSKGSISFDCGVRNSILEDTLNSFSELMNLDPYTGWCYSPSTTDQILANGLSTFSSVPHASPDEFDLVDQSSVSVFMTDVGGNYNALRTSSNHGEKVVFQQMDAPLGFSDDANYLNSKQQIQGSSQQFKTSDMGNDMICRPPSCSLDERMLRALSFFRESAGGRILAQVWVPIKLGDQFILSTSEQPYLLDPVLAGFREVSRTFNFSAEGKPGSFLGLPGRVFISKVPEWTSNVGFYNKNEYLRMEHAIYHEVRGSMAVPVFDLHSEMPCCAVLELVTTTEKPGFDREWEIFCHALQVVNLRTTMPRRLLPKSLLNNKRAGLTEITDVLRAVCHAHRLPLALTWVPCCYSLGNRDETMRTQVKEGHFYSSEKVVLCIEESACYINDKVMEGFVHACVEHDLEEGQGIAGKALQSSHPFFYPDVKAYDISEYPLVHHARKYNLNAAVAIKLMSTHTSDNYILEFFLPVNVRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIVGSPEMPLMPSNLRYDDFDAAHNQAMSESRRQVKKKRNTVQKNISFNVLQQHFSGRLKDAAKSIGVCPTTLKRICRQHGISRWPSCKINKLNRSLKDIQDVLDSVQGVEGGLKCDPSREEFVDGGSIIQVFNARGSLLFREKSMHVKEPAQDTVSVSPASSSEGENSAVELEDDLVNLVRNQLVHSRSVLIPNSCERQWMKATASSVDCNRDSKSMAMVDRSS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0029 855 PANTHER PROTEIN NLP8 235 812 IPR045012 GO:0003700
Bisa12g0029 855 Pfam RWP-RK domain 675 723 IPR003035 -
Bisa12g0029 855 ProSiteProfiles RWP-RK domain profile. 655 743 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0029 Bisa-ChrBisa12 545316 550941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0029 133 806 NLP Transcription Factor Family AT2G43500 49.441 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bisa12g0029 RWP-RK 1.6e-23 No_clan