Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0017 ATGGGGCATAGCTCAAGGAAGAAGAAACGTGGAGGAGGTAGTGGGAGGAGAAGTAAGGGAAGAGCACCTTTCAAAGATCACGTATCTCAATTTAACGGCGATGATAATGAACTTTCGGAAGAAATTACTGCTTTATGTGCAATTTTTCAAGATGACTGCAAGATTCTCCCTGGCTCACCTCCTCAAATATTTATTAAGCTAAGACCCTATTCAAAGGGCATGGGGTATGAGGATGTAGATGTTTCAGCTGTTCTTGTTGTTAGGTGCTTACCTGGGTATCCTTTCAAGTGTCCAAAGTTGCAAATTACTCCTGAGAAAGGTTTATCAGAGAGTGATGCTGATAAACTTTTGTCTCTCCTCAATGATCAGGTCTCAGTTGTTGGCTGTCTATGCTTTTGCAATAAGCTGTTAATCACTAATACTTTTGGTTCTCAAATTGTGTATGCTGGATTCAAATGGGAGTCAGCATGTCTGGTGCTAAATCCTGTGTCTGTTTTGTCCCTTTTCCCTTGCCATAAAGCTAATGTAAATGCTAGGGAGGGAAGAGTAATGATCTTTAATTTGGTGGAGGCTGCTCAAGAATTTATGTCTGGAATTGAGCCAGTTGGCAAATCAAATGAATCTCGCTCAACTATGGAGAGTAATGAAGAATCGTTTCTCAAGGATATAGCAACCTCAGATAGGAGTTCTTCCTTTGTTTATGGTTTCATAGATCTCTTCAGTGGCTATGGAGAATCGTGGAATTGGGGTTTTGGAATGGATGAAACTAGTGAGAAAAGTTCTTCTGCACCACCTTTAAAGTTAGATGCCTCAGAACATGTTTATGAGGCCAAGGCAAATAATTATGATAGAAAGTCTGAGCCATTTGAAACGCAAGAAAAAAAGCAAGGTTCATTAGTTTCTCAAACTGCCAAATTAGATACTTTGGGGGAAAATGGTGAAGAAAGCAACAAGAGCATGTCTTCATCTTGTTCAAGTGGATCTCAAGTGGAGAAACTTGTAGGGAGTGGCAATGAAAGTGCGAAAGAGGATCTTATCCTGCATGAGTATACATCAGAAGATAATGAAGAAGGTACTTATGCAAGCACGTCCTCAACGTCTCAGTCTTCTGCTTCCATGGTTAATCATCAAGCATCTCAAACAGTCGAAAAGGATCTGATAATGGTACACATGCTTCACCTTGCTTGTGCTTCAAAAGAACCATTGGCTAACTCTTTGCCACAAATTGCTACAGAGCTGTACAATTTAGGGGTCATTTCTGATTGGGCAAGGGATATGGCATTTAAACCACCTTCTCATTTTAACAAAATCTTTAATCATGTTTTCCAGAAATACCTGGTATCATCCAGAATATCTCAATTTTGGAAACCTTCTGATCTTGAGAGCCCATCTACAGTTCCCTTACGTTCTCGATATTTGAATGACTTTGAGGAGCTACGGCCTCTAGGTCATGGTGGTTTTGGCCATGTTGTATTGTGCAAAAACAAACTTGATGGACGGCAGTATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGGGTGCCTGTCAATGAAAGAATATTAAGGGAAGTAGCAACTCTTTCCCGTTTGCAGCACCAGCACGTCGTTCGATATTATCAGGCATGGTTTGAAACTGGAGTTGCTGATTCTTATGGTGATGCTACTTGGGGTTCAAAGACTCCTGCAAGCTCTACTTTCAGCTTTAAAGCTGCAAGCTCCCCTGATGCCCTTGGGCATGAGAATCAGCTTGAATCAACATACCTTTACATTCAAATGGAGTACTGCCCTAGGACCCTCCGCCAGGTATTTGAATCATACACTCATTTTGACAAAGAACTAGCATGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGGACAAGGAATAATTCATCGGGATTTGACACCAAGTAACATATTTTTTGATGCTCGCAACGATATCAAAATTGGTGATTTTGGTCTTGCCAAGTTTTTGAAGTTGGAGCAGTTGGATCAAGATCCAGGACATCCAGCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGCACCTATTTCTATACAGCTCCAGAAATTGAGCAAGGATGGCCTAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAATGGTCTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGATATATTGTATTATCCGATCTGAAGCAGAAAGGAGAACTGCCTCTTGCATGGTTTTCTGAGTTTCCTGAACAGGAAGCTTTGCTGCGACGCTTAATGTCTCCAAGCCCATCTGATCGTCCTTCTGCCACAGAACTTTTACAGCAAGCATTCCCTCCACGAATGGAGTCTGAGTTATTAGATGATATTCTGCGAACAATGAAGACATCAGAGGATACAAACGTATATGATAAAGTTGTAAATGCTATCTTTGATAAAGAGAGGTTAAGCGTGAAAGAAAACCCTCATCGGGCTGGTAGATTAGGGTCAGTTGGAGACAGCAGTTCTTCCATTCAATACACAGATTTAGAAACTGAGGTTCGTGATTATGTTGTAGATATCGCTAGAGAAGTATTCAGGCAGCACTGTGCAAAGCACCTAGAAATATTACCAATGCGATTGTTGGAAGATTTCCCACAGTATAATAGAAATGCGGTTAAACTTTTGACCCATGGGGGAGACATGCTTGAACTTTGTCATGAGCTGCGTTTGCCTTTTGCAAACTGGGTTATATCTAACCAGAAATTTTCATTCAAACGATATGAGATATCATACGTCTACAGAAGAGCAGTTGGACATTCATCACCAAACCGCTACCTTCAGGGCGATTTTGACATTATTGGTGGTACATCGGCACTGACAGAGGCAGAGGTCATAAAGGTTACCAGGGATATAGTCACTTGTATTTTTCCTGCAGACTCATGTGACATTCATCTAAACCATGGTGACCTACTGAATGCAATTTGGTCATGGATTGGAGTCGAGGCGAAGCACAGACTTAAAGTGGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCCTCAGTAAGGAAATCAAAATGGGCAGTGATACGAAGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTGTTGTAAATAGGTTACAGACAGTGGGTTTAAGATTCTGTGGAGCTGCAGATCAAGCACTTCCTAGATTACGAGGAGCCCTTCCATATGATAAACGTACATGCATGGCACTTGATGAATTGTCTGAGCTCTTCAGTCTCCTGAGAGTTTGGAGGATTAACAATAATGTCTATATAGATGCTTTGATGCCCCCAACTGAAAGTTATCACAGAGACTTATTTTTCCAGGTATACTTAACAAAGGAGAATAATTCTGGATCACTCCCAGAAGGTGCCTTGCTGGCTGTTGGTGGTCGCTATGACTACCTGCTTCATCAGATGTTGAGCCGTGACTATAAAACAAATACTCCTAGTGGTGTAGGAACTAGCCTCGCACTAGAGACAATAATTCAGAATTGCCCCGTAGATTTTAAGCCCATTAGAAATGAAGCCAGCACCAAAATTCTTGTTTGTTCAAGAGGAGGTGGTGGTCTGCTAATGGAGCGCATGCAACTATTGGCTGAATTATGGGAGGAGAAATTTAAGGCTGAATTTGTTCCCACCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCCAATGAACACGATATCAAATGTCTTGTAATCATCACAGATCAGACAGGTTCTGTTAAGGTTCGTCACCTTAAGAAGGAGAAGATTGTTGAGAGAGAAAATCTAGTCAAGTTTCTATCAAATGCTATGGCAACACAATTTAGAAACCCCTCCATTTGGATGATTATATATCATTTAGCAGTAGAACAATTCAATCTTTTTGGGAAAGGGAGATCTGAGCTAGTCCGCGTCGTCTTCGTCCTTCGACTCTCAAAGGAAAGGAATTGCTACATCAGTGAGGTAAGAATAAGATCTGCTTCTGCTTCGTGCTTCCTTTCGCCATTTGCAAGGAAAAAGTCCGACAATACCAACGTGTCGCCGGTACACCAAAGATTCAAGAAGATGAAAGAAAGAGGGGACAAGGGTTTCAGGGTGGGTTTTCTTCCAATATCAGCAATGGACAAGTCAAGTGCTTTGGAGTATATCAATCAGATGTTCCCCAATGAGGCATCTCTTTCTGGTGTTGAGCCACTTATGCAAAAGATACAGAATGAGATTCGCAGTGTTGATGCTGGGATTTTAGCAGCTGTTCGCCAACAGAGTAATTCAGGGACTAAAGCAAAAGAAGATCTTGCTGCTGCTGCAAGTGCGGTGGAGGAACTAATGTATAAGATTCGAGAAATAAAAACTAAAGCTGTTCAAAGTGAAACAATGGTCCAAGAAATATGCCGTGACATTAAGAAACTGGACTTTGCAAAGAAACATATAACTACAACAATTACTGCTCTTCATCGTCTTACCATGCTTGTCTCTGCTGTTGAACAGCTTCAAGTGATGGCTTCAAAACGGCAGTATAAAGAGGCAGCCGCACAGCTTGAGGCAGTGAACCAATTATGTAGTCACTTTGAGGCCTATAGGGATATTCCGAAGATCATAGAGCTCAGAGAGAAGTTTAAGAATATAAAGCAAATTCTCAAGTCACATGTTTTTTCTGATTTCGCAAGCTTAGGTACTGGAAAGGAGACAGAAGAAACTAATTTGCTCCAGCAGTTGTCTGATGCCTGTTTAGTTGTTGATGCATTAGAGCCCTCTGTTAGGGAAGAGTTGGTAAATAATTTCTGCAATAGGGAGCTTACTTCATATGAACAAATTTTTGAAGGAGCTGAACTGGCAAAGCTGGATAAAACGGAACGAAGATATGCATGGATTAAGCGCCGAATGAGATCTAATGAGGACATATGGAAAATCTTTCCCTCTTCGTGGCATGTTTCTTATCTTCTTTGTATCCAATTCTGCAAGAAGACAAGGAAACAACTTGAGGACATTCTTGCTAATCTGAAAGAAAAACCAGATGTTGGGACCTTGTTGCTGGCATTACAACGAACATTAGAATTTGAGGATGAATTGGCTGAGAAATTTGGAGGAGGCACACATAGCAGGGAGATTGGGAATGAGATTGAAGAAATTGGTAGAGGGGGTAATCCTAGTAGCAGTGCTTCGGACATCCGGAAGAAGTATGAAAGGAAGCTTGCTGCACATCAAGGAAGTGGCAATGAAGAAAAAGATGGAAGTAAAGATTTGGCAGTGCCTGGAGCCGGGTTCAACTTCCGTGGAATCATTTCATCTTGCTTTGAACCTCACTTGACAGTATATGTAGAACTGGAAGAGAAGACTCTGATGGAAAATCTGGAGAAGCTTGTTCAGGAGGAGACATGGGATATTGAGGATGGCAGTCAGAATAATGTTTTATCCAGCAGCATGCAGTTGTTCCTTATAATCAAGAGGAGCTTGAAGAGATGCAGTGCTTTAACAAAGAACCAGACACTTTTTAATTTGTTCAAGGTTTTCTCAAGAATTCTTAAAGCATATGCTACCAAACTCTTTGCAAGACTACCCAGGGGGGGCACTGGGATTGTTGCTGCAGCCACAGGCATGGATGGACAGATAAAGACGTCTGACAGAGATGAAAGGGTGATTTGTTATATTGTCAATTCAGCTGAATATTGCCACAAGACGGCAGGTGAACTGGCTGAAAGTGTTGCTAAAATAATTGATCCTCAATATGCTGAAGGAGTAGATATGTCAGAAGTACAGGATGAATTTTCAGCTGTTATAACGAAATCATTGGTCACCCTGGTGCATGGCCTGGAAACCAAATTTGACATTGAAATGGCTGCAATGACACGTGTCCCATGGGGTACACTTGAAAGCGTTGGTGATCAATCCGAGTATGTTAATGGCATAAATATAATTCTTACCACTAGCATTCCTGTACTTGGAAACCTCCTTTCATCTGTCTACTTTCAGTTCTTTCTGGACAAGCTAGCATCTTCTCTTGGTCCACGCTTTTATTCTAATATCTTCAAATGCAAGCACATATCAGAAACGGGAGCTCAACAGATGCTATTGGATACCCAAGCCGTTAAGACGATCCTTCTTGAAATTCCTTCCCTTGGTAGACAGACATCAGGCGCTGCTAGCTATTCAAAGTTTGTGAGTCGTGAAATGAGCAAAGCCGAAGCCCTTTTGAAGGTTATACTCTCGCCCATTGATTCTGTAGCCGATACATACCGTGCACTGCTGCCTGAGGGTACCCCCATGGAATTTCAGCGGATACTAGAGCTTAAGGGACTTAAAAAAGCTGATCAACAAACTATTCTAGATGACTTCAACAAACACGGGCCTGGAATTAAGCAAACTCAGATTCCACCGGCAGTTTCCCTAGCTGCTCCAGCAGCTCCCGTGGTAAGCAGTTCCACAGCTGTCGGGCTAATTGCTTCCAGAGAGGATGTGCTGACAAGGGCTGCTGCACTTGGACGAGGAGCTGCCACCACGGGGTTCAAGAGATTCCTTGCTCTAACAGAAGCCGCCAAAGATCGGAAGGATGGACCTTTCCGGAAGTTATTTAATGCATGA 6594 0.4204 MGHSSRKKKRGGGSGRRSKGRAPFKDHVSQFNGDDNELSEEITALCAIFQDDCKILPGSPPQIFIKLRPYSKGMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPEKGLSESDADKLLSLLNDQVSVVGCLCFCNKLLITNTFGSQIVYAGFKWESACLVLNPVSVLSLFPCHKANVNAREGRVMIFNLVEAAQEFMSGIEPVGKSNESRSTMESNEESFLKDIATSDRSSSFVYGFIDLFSGYGESWNWGFGMDETSEKSSSAPPLKLDASEHVYEAKANNYDRKSEPFETQEKKQGSLVSQTAKLDTLGENGEESNKSMSSSCSSGSQVEKLVGSGNESAKEDLILHEYTSEDNEEGTYASTSSTSQSSASMVNHQASQTVEKDLIMVHMLHLACASKEPLANSLPQIATELYNLGVISDWARDMAFKPPSHFNKIFNHVFQKYLVSSRISQFWKPSDLESPSTVPLRSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKRVPVNERILREVATLSRLQHQHVVRYYQAWFETGVADSYGDATWGSKTPASSTFSFKAASSPDALGHENQLESTYLYIQMEYCPRTLRQVFESYTHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDPGHPADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGMVFFELWHPFGTAMERYIVLSDLKQKGELPLAWFSEFPEQEALLRRLMSPSPSDRPSATELLQQAFPPRMESELLDDILRTMKTSEDTNVYDKVVNAIFDKERLSVKENPHRAGRLGSVGDSSSSIQYTDLETEVRDYVVDIAREVFRQHCAKHLEILPMRLLEDFPQYNRNAVKLLTHGGDMLELCHELRLPFANWVISNQKFSFKRYEISYVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCIFPADSCDIHLNHGDLLNAIWSWIGVEAKHRLKVAELLSMMGSLRPQSSVRKSKWAVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQALPRLRGALPYDKRTCMALDELSELFSLLRVWRINNNVYIDALMPPTESYHRDLFFQVYLTKENNSGSLPEGALLAVGGRYDYLLHQMLSRDYKTNTPSGVGTSLALETIIQNCPVDFKPIRNEASTKILVCSRGGGGLLMERMQLLAELWEEKFKAEFVPTPDPSLTEQYEYANEHDIKCLVIITDQTGSVKVRHLKKEKIVERENLVKFLSNAMATQFRNPSIWMIIYHLAVEQFNLFGKGRSELVRVVFVLRLSKERNCYISEVRIRSASASCFLSPFARKKSDNTNVSPVHQRFKKMKERGDKGFRVGFLPISAMDKSSALEYINQMFPNEASLSGVEPLMQKIQNEIRSVDAGILAAVRQQSNSGTKAKEDLAAAASAVEELMYKIREIKTKAVQSETMVQEICRDIKKLDFAKKHITTTITALHRLTMLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDIPKIIELREKFKNIKQILKSHVFSDFASLGTGKETEETNLLQQLSDACLVVDALEPSVREELVNNFCNRELTSYEQIFEGAELAKLDKTERRYAWIKRRMRSNEDIWKIFPSSWHVSYLLCIQFCKKTRKQLEDILANLKEKPDVGTLLLALQRTLEFEDELAEKFGGGTHSREIGNEIEEIGRGGNPSSSASDIRKKYERKLAAHQGSGNEEKDGSKDLAVPGAGFNFRGIISSCFEPHLTVYVELEEKTLMENLEKLVQEETWDIEDGSQNNVLSSSMQLFLIIKRSLKRCSALTKNQTLFNLFKVFSRILKAYATKLFARLPRGGTGIVAAATGMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVAKIIDPQYAEGVDMSEVQDEFSAVITKSLVTLVHGLETKFDIEMAAMTRVPWGTLESVGDQSEYVNGINIILTTSIPVLGNLLSSVYFQFFLDKLASSLGPRFYSNIFKCKHISETGAQQMLLDTQAVKTILLEIPSLGRQTSGAASYSKFVSREMSKAEALLKVILSPIDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGIKQTQIPPAVSLAAPAAPVVSSSTAVGLIASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNA 2197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0017 2197 FunFam Vacuolar protein sorting-associated protein 53 A 1987 2127 - -
Bisa12g0017 2197 SUPERFAMILY Class II aaRS and biotin synthetases 842 1171 IPR045864 -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 1700 1726 - -
Bisa12g0017 2197 Gene3D Phosphorylase Kinase; domain 1 464 594 - -
Bisa12g0017 2197 ProSiteProfiles Protein kinase domain profile. 476 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0017 2197 Gene3D Ubiquitin Conjugating Enzyme 29 127 IPR016135 -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 352 377 - -
Bisa12g0017 2197 SMART RWD2001b 40 146 IPR006575 GO:0005515
Bisa12g0017 2197 SUPERFAMILY Protein kinase-like (PK-like) 472 786 IPR011009 -
Bisa12g0017 2197 Pfam Vps53-like, N-terminal 1381 1796 IPR007234 -
Bisa12g0017 2197 Pfam RWD domain 37 125 IPR006575 GO:0005515
Bisa12g0017 2197 FunFam eIF-2-alpha kinase GCN2 464 594 - -
Bisa12g0017 2197 FunFam eIF-2-alpha kinase GCN2 598 791 - -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 1 16 - -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 293 335 - -
Bisa12g0017 2197 PANTHER VACUOLAR SORTING PROTEIN 53 1382 2184 IPR039766 GO:0000938|GO:0042147
Bisa12g0017 2197 ProSitePatterns Protein kinases ATP-binding region signature. 482 506 IPR017441 GO:0005524
Bisa12g0017 2197 Coils Coil 1030 1050 - -
Bisa12g0017 2197 CDD STKc_EIF2AK4_GCN2_rpt2 470 778 - -
Bisa12g0017 2197 SUPERFAMILY UBC-like 36 124 IPR016135 -
Bisa12g0017 2197 ProSitePatterns Tyrosine protein kinases specific active-site signature. 633 645 IPR008266 GO:0004672|GO:0006468
Bisa12g0017 2197 Pfam Protein kinase domain 476 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 356 377 - -
Bisa12g0017 2197 Coils Coil 1655 1675 - -
Bisa12g0017 2197 Gene3D - 1184 1278 IPR036621 -
Bisa12g0017 2197 Gene3D Bira Bifunctional Protein; Domain 2 841 1176 IPR045864 -
Bisa12g0017 2197 ProSiteProfiles RWD domain profile. 40 146 IPR006575 GO:0005515
Bisa12g0017 2197 Gene3D - 1991 2127 IPR038260 -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 281 338 - -
Bisa12g0017 2197 Pfam Histidyl-tRNA synthetase 931 1170 IPR041715 -
Bisa12g0017 2197 FunFam eIF-2-alpha kinase GCN2 29 127 - -
Bisa12g0017 2197 FunFam Histidine--tRNA ligase, cytoplasmic 1184 1277 - -
Bisa12g0017 2197 SUPERFAMILY Class II aaRS ABD-related 1189 1277 - -
Bisa12g0017 2197 Gene3D Transferase(Phosphotransferase) domain 1 597 789 - -
Bisa12g0017 2197 FunFam eIF-2-alpha kinase GCN2 841 1177 - -
Bisa12g0017 2197 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0017 Bisa-ChrBisa12 349415 407111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0017 476 781 MAP Kinase Kinase Kinase AT1G63700 25.321 1.94e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Bisa12g0017 Vps53_N 2.1e-147 CL0295