LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g2689	ATGGCCACTGTGGCTGCAGTTCGAGGAATAGGAGTCGGAGTGACGAAGCTCCAAATGCCCCATCAATCTAACTACAACAAGAAGTCCCTATTTCTCGGCCAGAAGCTCAGGGTTAAACCCTCTGCAGAATCCCAATGCAGTGGAAGATTAAACCCCTCGAACCCTAAATCTTTCTTGGCTTTCGCGTTCGGAGGCGAATGGGTCGATTCGGTTCACAACCTCTTCGTCGGCGTCGGAGTTGGGCTTCCTTGCACGGTCATGGAGTGCGGCGACATTATCTACCGTAGCACTCTTCCCAAGTCGAATGGCTTGACGATTACAGCACCTGGGGTGGTTCTGGCCCTGGGTGCTCTGTCTTATCTCTGGGCTACGCCTGGTGTGGCCCCTGGTTTCTTCGACATGTTTGTTCTTGCTTTTGTTGAAAGATTGTTCAGACCCACTTACAGAAAGGATGATTTTGTGCTGGGGAAGAAGTTAGGCGAGGGATCCTTTGGAGTGGTTTATAGGGTGTCATCGACCAAGAAGCCCTCTTCTTCAAAGGAAGGTGACTTGGTCTTGAAAAAGGCTACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTTCGAAGAGCATGTGCAAACAGCTGTGCTGATTTTGTTTATGGCTTCCTTGAGAGTTCCGCAAAGAAAGGTGGTGAATACTGGCTTATATGGAAGTTTGAAGGGGATGCCACCCTAGCAGACCTGATACAGAGTAAAGAGTTCCCGTATAATGTTCAAACAATGATTCTGGGCAAGGTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATAATTCAAACAATTATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGAATTGTGCACAGGGATATTAAGCCCCAGAACATTATTTTCTCTGAAGGGTCTCGAACATTCAAAATTATTGATCTCGGAGCTGCAGCAGATTTGCGAGTTGGCATCAACTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATGCTGCGCCAGAGCAGTACATCATGAGCACCCAAACTCCCTCTGCACCCTCAGCTCCCGTTGCAACTGCACTTTCCCCGGTCCTGTGGCAGCTGAATCTGCCAGACAGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCATTCCCTGGATTGCGCACAGATAATAGCCTTATACAATTTAAACGGCAGTTGAAAAGGTGTGACTATGACTTGGTTGCATGGAGAAAAAGTGTAGAACCTCGCTGTAGCCCTGAAATCAGGAGGGGCTTTGAGCTTCTGGATTTTGATGGTGGAATTGGATGGGAACTTCTGACATCAATGGTCAGATACAAACCGCGGCAAAGACTCAGTGCAAAAGCAGCATTAGCTCATCCCTACTTTGGCAGGGAAGGGTTATTGGCTCTGTCTATCATGCAAAATCTAAGGCTGCAACTCTTACGAGCAACACAGCAGGATTATGGGGAAGCAGCCAACTGGATTATTCGGCTTATGGCAAAATCTGGAACAGCACAAGATGGAGGATTTACTGAAGCTCAGCTCCAGGAACTACGGAAAATTGAACCAAAGAAGAAGGGTAGTGAACAGAGAAATGTTCTGGCTTCAGCTCTCAAATTTCAGAGGAAGATTATAAGAACCTTGAATGAGAGTATGGATGAGCTTAACCAACGCAGGAAGAGCCTTTGGTGGAGCAGATGGATCCCCAGAGAAGAATGA	1749	0.4637	MATVAAVRGIGVGVTKLQMPHQSNYNKKSLFLGQKLRVKPSAESQCSGRLNPSNPKSFLAFAFGGEWVDSVHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTITAPGVVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRVSSTKKPSSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSAKKGGEYWLIWKFEGDATLADLIQSKEFPYNVQTMILGKVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFKRQLKRCDYDLVAWRKSVEPRCSPEIRRGFELLDFDGGIGWELLTSMVRYKPRQRLSAKAALAHPYFGREGLLALSIMQNLRLQLLRATQQDYGEAANWIIRLMAKSGTAQDGGFTEAQLQELRKIEPKKKGSEQRNVLASALKFQRKIIRTLNESMDELNQRRKSLWWSRWIPREE	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g2689	582	Coils	Coil	548	568	-	-
	Bisa11g2689	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	295	307	IPR008271	GO:0004672\|GO:0006468
	Bisa11g2689	582	Pfam	Protein kinase domain	154	347	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g2689	582	Gene3D	Transferase(Phosphotransferase) domain 1	262	476	-	-
	Bisa11g2689	582	SUPERFAMILY	Protein kinase-like (PK-like)	138	473	IPR011009	-
	Bisa11g2689	582	CDD	STKc_SNT7_plant	157	472	-	-
	Bisa11g2689	582	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	263	477	-	-
	Bisa11g2689	582	ProSitePatterns	Protein kinases ATP-binding region signature.	159	187	IPR017441	GO:0005524
	Bisa11g2689	582	Gene3D	Phosphorylase Kinase; domain 1	139	234	-	-
	Bisa11g2689	582	SMART	serkin_6	153	472	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g2689	582	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	64	557	-	-
	Bisa11g2689	582	ProSiteProfiles	Protein kinase domain profile.	153	472	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g2689	Bisa-ChrBisa11	52415534	52427881	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g2689	272	472	Core Cell Cycle Gene Families	AT2G38620	31.132	6.44e-18	82.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Bisa11g2689		Pkinase	3.3e-20	CL0016