Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2577 ATGGAGGTCGATGCACCGCAAACCTCGTCTAGACACAGTAAGAGAAAGCCCAAGAGAAAACGAACCCGGGAAGACCCAGAACTTGAATGCCTGGACTCCCTGTCATGGAACCCATCTCTTCCTGAAAGCGATGATCATTTTTCTTTGTTTGTGGGCTCAAATGAACTTGAAGGAGGTTTTCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTACAAATGCCTGATCCTGAAGAAGACAAGAGGAAGAAGAAGTCTAAACATAAAGCGGATTTGAAGAAACAGAAGCAGGGTGAAGTTGAGGTTGCTTGTGTGGAGGAGGATGGGGCGAAGTTTGAAGAAAAAAAGGATGAGGGTGCGATGACTAAAAGGAAGGAAAAGAAGGAAAAGAAGAAGAAGAAGAAAGAGAAGGAGAAGAAAAAGGAAGCTTCTGACCTAGTTACTAATGTGAAGGATGATAATGAGGAAGAGGACATTGATGAAATGGAATTTTACGCATGGGATGAGTTGAGACTTCATCCTCTGATCATGAAGGCAGTATACAAGCTTGGCTTTAAGGAACCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCCTCAGAGACAGGATCTGGGAAAACACTTGCATTTGGTTTGCCCATCTTGCAACGTCTTTTAGAGGAGAGAGAGAAGTCTGGAAAGATGGTTGAACAAAAGGGTGAAGAACCTGACAAGTATGCTCCTACTGGCGTCCTAAGGGCTCTTATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAATCATATCAATGTTAGGGTGATCCCTATAGTTGGGGGCATTTTGACAGAAAAACAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTATTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTCGATGAGGCTGATCGAATGATACAAAATGGTCATTTTAAAGAGTTACAGTCAATAATTGACATGCTTCCCATGTCCAACATGTCTGGTGGGGATGATTCTCAATCTGCACAAAATTGTATTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCAGCAACTGTGGCACTATCTGCTGATTTTCGCAAGAAGTTGAAGCATGCTTCAACAAAACAAAAGCAATCAGTGTTAGATGGATTTAATTCCATTGAAACTCTTTCTGAACGTGCGGGTATGAGAGCCAATGCTGCAATCATTAACCTTACTAATCCAACAATATTAGCAGCAAAGCTTGAGGAATCATTTATTGAATGCAAGGAAGAAGATAAAGATGCTTATTTGTATTATATCTTGACTGTCCATGGACAAGGCCGTACAATAGTATTCTGTACTTCAATTGCAGCTCTGCGTCATATTTCTTCTCTACTGCACATTCTTGGCATCAACGCTCGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGTTTAAAGGCCATTGATCGCTTTCGCGAAGATGAAAATGGCATACTTATTGCTACTGATGTTGCAGCGAGGGGTCTTGATATTCCTGGTATTAGAACAGTTGTCCACTATCAACTTCCACATTCAGGAGATGTCTATGTTCATAGAAGTGGAAGAACAGCAAGGGCTTCTGCTGAAGGGTGCAGCATCGCTTTAATCTCACCAAAAGATACATCGAAGTTTGCTTCATTGTGCAAGTCCTTTTCCAAGGATACTTTTCAGCGATTTCCTTTAGAGAATTCGTACATGCCAGAAGTTCTAAAGCGATTGTCTATTGCACGTCAAATAGACAAGATAATGCGAAAGGATTCCCAGGAAAAAGCCCAAAAGAGCTGGTTTGAACGAAATGCAGAATCAGTGGAATTAGTTGTGGAAAATTATGACAGTGAAGAGGAAAGAGTGAAGAAATATAAGCAAATGAAAGCCAGCTCTACCCAGTTGAAGAAATTGCAGCAGGAGCTCAACATGCTGCTTTCACGTCCCTTACAATCAAAAACATTTTCTCATCGATATCTAGCTGGGGCTGGGGTAACACCTCTCATGCAGGAACAGTTCCAACAATTAGCCAGGCAAAAGCAAGTTGATCCCCTAAGTTCAGTTGTAACCGGTAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCGTGGAAGCACTTCAGGCGCTGCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATAGGACAGGAAAACGGATAAATATGCAGAATCTGAAAAGAAAGAGAAAAGAGGAGAAAAAACGTTTGCGTGACCAGCGAAAAAAGCAGAAAAGAAAACTAAAGATGGAGAGTGAATAG 2406 0.421 MEVDAPQTSSRHSKRKPKRKRTREDPELECLDSLSWNPSLPESDDHFSLFVGSNELEGGFLSLEEIDEAEYGLQMPDPEEDKRKKKSKHKADLKKQKQGEVEVACVEEDGAKFEEKKDEGAMTKRKEKKEKKKKKKEKEKKKEASDLVTNVKDDNEEEDIDEMEFYAWDELRLHPLIMKAVYKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKSGKMVEQKGEEPDKYAPTGVLRALIIAPTRELALQVTDHLKAVANHINVRVIPIVGGILTEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQNGHFKELQSIIDMLPMSNMSGGDDSQSAQNCITVSSYQRKKRQTLVFSATVALSADFRKKLKHASTKQKQSVLDGFNSIETLSERAGMRANAAIINLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLHILGINARTLHAQMQQRARLKAIDRFREDENGILIATDVAARGLDIPGIRTVVHYQLPHSGDVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIMRKDSQEKAQKSWFERNAESVELVVENYDSEEERVKKYKQMKASSTQLKKLQQELNMLLSRPLQSKTFSHRYLAGAGVTPLMQEQFQQLARQKQVDPLSSVVTGKGKLVVIGQDCVEALQALRNAGEEVRMDVKDRTGKRINMQNLKRKRKEEKKRLRDQRKKQKRKLKMESE 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2577 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 452 613 IPR001650 -
Bisa11g2577 801 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 337 345 IPR000629 -
Bisa11g2577 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 415 IPR014001 -
Bisa11g2577 801 MobiDBLite consensus disorder prediction 777 793 - -
Bisa11g2577 801 Pfam Helicase conserved C-terminal domain 464 572 IPR001650 -
Bisa11g2577 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 589 IPR027417 -
Bisa11g2577 801 SMART ultradead3 185 425 IPR014001 -
Bisa11g2577 801 MobiDBLite consensus disorder prediction 67 102 - -
Bisa11g2577 801 MobiDBLite consensus disorder prediction 770 801 - -
Bisa11g2577 801 SMART helicmild6 492 573 IPR001650 -
Bisa11g2577 801 Coils Coil 121 154 - -
Bisa11g2577 801 Coils Coil 649 689 - -
Bisa11g2577 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Bisa11g2577 801 PANTHER RNA HELICASE 128 741 - -
Bisa11g2577 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 361 IPR027417 -
Bisa11g2577 801 CDD SF2_C_DEAD 453 582 - -
Bisa11g2577 801 MobiDBLite consensus disorder prediction 1 26 - -
Bisa11g2577 801 Gene3D - 447 695 IPR027417 -
Bisa11g2577 801 MobiDBLite consensus disorder prediction 117 147 - -
Bisa11g2577 801 CDD DEADc_DDX24 177 441 - -
Bisa11g2577 801 Gene3D - 122 415 IPR027417 -
Bisa11g2577 801 Coils Coil 768 799 - -
Bisa11g2577 801 Pfam DEAD/DEAH box helicase 190 398 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2577 Bisa-ChrBisa11 50994476 51005794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2577 167 613 Eukaryotic Initiation Factors Gene Family AT5G11200 27.451 7.76e-37 143