Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2562 ATGGCGACCATTTCAAAGTTGTATACGATGCAAGAAGCCTCCCAACATAACACCAAAGACGATTGCTGGGTCGTCATTGACGGCAAGGTACCAACGTGGTTTCTTCCTCTGTCATTTTCTCTTTCTGGAGTTCCTCATGATGCTCAGTCTCGTTCTCGCTTCATGGATGGTGGATATAACATCAAAGGGGAAACTGCATACAGACTTTTCTTAGGAACTTTTAAGGCATTGTTTGTGGATACCATTTCTTTCATATGTCTGCAACATTTTGTAAAATCCCGTGGTGTCAAGAAGCTCATGAAAGGAAAATCAGAACCAATCCTGGAAGGGGAGCATAAATGTTTGCTGGAAGCAGTTAAATTTGGTGCACTATTGGATGGCCTTTGTGAAAAAATTAAAGCATCTAATATTTTAAGGTCCGTTTCAAAATCATATGGTGCTGCACCATCTTTGGATGTTGTGTCTGTGGGAGTGTATAGGAGAGATGTGGGAGGAGCTGTTATTTTTGTACATTGGGTATATGACGTGTCATCGTATTTGGATGATCACCCTGGTGGAGATGATGTAATCATTGCCGCAACTGGGATAGATGCAACGGATGAGTTTGAAGATGCTGGCCACAGTAAAAGCGCTAGAGACCTTATGGAAAACTTTTTTATTGGCGAGCTCGACACATCAACCCCAGTTTCCTCCGAGAAGCCAGTGATAGATGATTTTCAAGGTTTCTTCCACTTGACAAAGAAGCATTGGGCTGTTCCTGTAGCTGTTGTTGGTATTTCAGTGGCCGTCGGCTTTTTATACTTGCCTAGTCATCGTAGTTTTCAGTGGCAGCTTCTGCAAGTGCTAGCAATGGCGATGCAAGGAGTGCAGAAGAACACTCTGTACGTGGGTGGGCTAGCGGAAGAGGTGAACGAGGCCATCCTTCACGCTGCCTTCATACCCTTTGGGGACATCAAGGACGTCAAAACTCCGCTCGACCAGGCTACCCAGAAGCACCGTTCTTTCGGCTTCGTCACCTTCTTGGAGAGGGAGGATGCCTCCGCCGCCATGGACAACATGGACGGCGCTGAGCTTTACGGCCGTGTACTCACCGTCAACTATGCCCTCCCTGAACGCATTAAGGGTGGTGAACAGGGTTGGGCTGCCCAGCCAATTTGGGCGGATGCTGATACTTGGTTTGAGCGCCAGCAGCAAGAAGAGGAAATGCGCCGTATTGAGGCAGAGAATAGAGCTGCAATGCAAGCTGCAGAAGACATACGCAGAAAACAACTAGCCCAAGAGAAAGAAGGAGAGAAGGAAGAGGAAATTGAGCTCAAGGATGATCCCATGGCAAAGGCTGAAGCAGAGGTCCTGGAACTAAATAACCAATGA 1371 0.4697 MATISKLYTMQEASQHNTKDDCWVVIDGKVPTWFLPLSFSLSGVPHDAQSRSRFMDGGYNIKGETAYRLFLGTFKALFVDTISFICLQHFVKSRGVKKLMKGKSEPILEGEHKCLLEAVKFGALLDGLCEKIKASNILRSVSKSYGAAPSLDVVSVGVYRRDVGGAVIFVHWVYDVSSYLDDHPGGDDVIIAATGIDATDEFEDAGHSKSARDLMENFFIGELDTSTPVSSEKPVIDDFQGFFHLTKKHWAVPVAVVGISVAVGFLYLPSHRSFQWQLLQVLAMAMQGVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEKEGEKEEEIELKDDPMAKAEAEVLELNNQ 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2562 456 SUPERFAMILY RNA-binding domain, RBD 274 379 IPR035979 GO:0003676
Bisa11g2562 456 Gene3D - 159 227 IPR036400 -
Bisa11g2562 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 363 IPR000504 GO:0003723
Bisa11g2562 456 Gene3D - 283 410 IPR012677 -
Bisa11g2562 456 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 163 224 IPR001199 -
Bisa11g2562 456 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 30 IPR036400 -
Bisa11g2562 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Bisa11g2562 456 Gene3D - 2 31 IPR036400 -
Bisa11g2562 456 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 179 186 IPR018506 GO:0020037
Bisa11g2562 456 SMART Cyt_b5_2 8 224 IPR001199 -
Bisa11g2562 456 Pfam Cytochrome b5-like Heme/Steroid binding domain 172 223 IPR001199 -
Bisa11g2562 456 Coils Coil 395 441 - -
Bisa11g2562 456 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 171 230 IPR036400 -
Bisa11g2562 456 PRINTS Cytochrome B5 signature 198 205 IPR001199 -
Bisa11g2562 456 PRINTS Cytochrome B5 signature 211 223 IPR001199 -
Bisa11g2562 456 PRINTS Cytochrome B5 signature 183 197 IPR001199 -
Bisa11g2562 456 PRINTS Cytochrome B5 signature 173 183 IPR001199 -
Bisa11g2562 456 CDD RRM_PPIE 294 368 IPR034168 GO:0003723
Bisa11g2562 456 PANTHER ATPASE E1 283 455 - -
Bisa11g2562 456 MobiDBLite consensus disorder prediction 416 444 - -
Bisa11g2562 456 FunFam Peptidyl-prolyl cis-trans isomerase 284 437 - -
Bisa11g2562 456 SMART rrm1_1 293 366 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2562 Bisa-ChrBisa11 50725017 50730590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2562 1 30 NADPH P450 reductases AT1G26340 70.000 2.07e-09 53.9