Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2549 ATGGAGCCCTTGGTTTCAAAACAACCATGGACGGCAGCCTTTAAAAGTGAACAAGTATCATCTGCTGGGCTCTCCAACATGGTCTACCATTTTCTTCTGTTTGCTTTTGAGATCAAAACGCATTGTACTAAGCTCCGCCGAAACTCAGAGCCATTCATCTCTGCTGTCTGTGTTCAAATGGGAAGCCACAGTAGCAATATCAACGACCACTGGAGAGCTGAAGAAGCCATTGGTGGGAACGCGGAAGCTCTTCAAGCTCTTAGAGAACTCATCATATTCCCACTTCGCTACTCACGCCAAGCTCAGAAGCTCGGTCTTAAATGGCCGCGAGGGTTGCTGCTATACGGTCCTCCAGGCACCGGAAAGACAAGTCTGGTACGAGCAGTTGTTCGGGAATGTGGAGCACATTTGGCAATTATCAGTCCTCATTCTGTACATAGAGCACATGCTGGGGAAAGTGAGAAAATTCTCCGTGAGGCCTTTTCAGAGGCATCATCTCATTCAACTTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGATGCACTCTGCCCTCGGCGTAATTCCAGAAGGGAGCAAGATGTCCGAGTTGCTTCCCAGCTCTTTACATTAATGGACTCAAATAAACCATCCTCATCTATGCCAGGAGTTGTTGTGGTTGCATCGACTAACAGAGTGGATGCAATTGACCCTGCCCTTAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAGGAGCGCTTTCAAATTCTTAAGCTTTACATGAAGAAGATTCCCTTGGATCCCAGTGTTGACTTAAAAACAATTGCTGCATCTTGCAATGGATATGTTGGAGCTGACTTGGAGGCTTTGTGTCGAGAGGCTACCATGTTTGCAGTTAAAAGGTCCTCTGATGCAAATGGAAATGATAGTAATTTCAGTTTAATGATGGAAGATTGGAAGAATGCAACATCTATTATTGGTCCAAGCATAACAAGAGGAGTTACAGTGGAAATTCCTAAAGTAAATTGGGAAGATATTGGGGGATTAAAAGAATTAAAGAAAAAGCTCCGGCAAGCTGTTGAATGGCCTATCAAGCATTCTGATGCGTTTTCAAGATTGGGCATTTCCCCTGTACGTGGGATTCTTCTGCATGGACCTCCGGGATGTTCCAAGACAACCCTTGCCAAAGCTGCTGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGCGCAGAATTGTATTCAATGTATGTTGGTGAAGGTGAAGCTTTGCTCCGTAACACATTTCAGAGAGCACGCCTTGCAGCTCCCAGCATAATATTTTTTGATGAGGCTGATGTGGTAGCTGCCAAACGGGGTGATACTTCAAGCAATAGCGTTACAGTTGGAGAGAGGCTTTTATCCACTCTTCTGACTGAGATGGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTCTTGGCGGCCACAAATCGCCCTTATGCAATAGATGCTGCACTTATGCGCCCTGGACGTTTTGATCTGGTGCTGTACGTGCCACCACCTGATTTAGAAGCTCGAAATGAGATACTCAGTGTACATACACGTGACATGAAACTAGGGAACGATGTCAATCTCAGCAGACTTGCAGAAGATACCGAGTTCTTCACAGGTGCTGAACTAGAGGGTTTATGCAAGGAAGCTGGAATTGTTGCTCTGAGGGAAGACATATCTGCCACTGTTGTGTGTGATCGCCATTTCCAGGTTGTGAGGAACTCTGTAAATCCAGCACTAACAAAAGCAGAAATTGATTCTTACTCATCTTTTATGAAGACCTCATCTTTAGCATCTTCTGGGAATTTCGAAACAATTTCGAGACCGGATAGGAAGAAAAGGGATTTGTTAGGTTCTATTTCTTTGGTTAAACTTGGTATTGTCGGCTGTATACTGCTTGCTGCTACTAAATACTTTGTCATGCATGAAGAACACTCTGTATGTGAAGTCGCTATCACCTGA 1998 0.4439 MEPLVSKQPWTAAFKSEQVSSAGLSNMVYHFLLFAFEIKTHCTKLRRNSEPFISAVCVQMGSHSSNINDHWRAEEAIGGNAEALQALRELIIFPLRYSRQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLAIISPHSVHRAHAGESEKILREAFSEASSHSTLGKPSVIFIDEIDALCPRRNSRREQDVRVASQLFTLMDSNKPSSSMPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYMKKIPLDPSVDLKTIAASCNGYVGADLEALCREATMFAVKRSSDANGNDSNFSLMMEDWKNATSIIGPSITRGVTVEIPKVNWEDIGGLKELKKKLRQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVAAKRGDTSSNSVTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARNEILSVHTRDMKLGNDVNLSRLAEDTEFFTGAELEGLCKEAGIVALREDISATVVCDRHFQVVRNSVNPALTKAEIDSYSSFMKTSSLASSGNFETISRPDRKKRDLLGSISLVKLGIVGCILLAATKYFVMHEEHSVCEVAIT 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2549 665 CDD RecA-like_CDC48_NLV2_r1-like 76 246 - -
Bisa11g2549 665 FunFam Cell division control protein 48-B-like protein 332 516 - -
Bisa11g2549 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 305 IPR027417 -
Bisa11g2549 665 Gene3D - 68 247 IPR027417 -
Bisa11g2549 665 FunFam spermatogenesis-associated protein 5-like protein 1 516 602 - -
Bisa11g2549 665 Gene3D - 332 516 IPR027417 -
Bisa11g2549 665 PANTHER AAA-FAMILY ATPASE 48 606 - -
Bisa11g2549 665 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 610 628 - -
Bisa11g2549 665 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 116 135 - -
Bisa11g2549 665 Gene3D - 249 331 - -
Bisa11g2549 665 ProSitePatterns AAA-protein family signature. 485 503 IPR003960 GO:0005524|GO:0016887
Bisa11g2549 665 FunFam Cell division control protein 48 homolog B 69 247 - -
Bisa11g2549 665 Gene3D - 517 608 - -
Bisa11g2549 665 CDD RecA-like_CDC48_r2-like 353 513 - -
Bisa11g2549 665 Pfam AAA+ lid domain 270 308 IPR041569 -
Bisa11g2549 665 Pfam AAA+ lid domain 537 582 IPR041569 -
Bisa11g2549 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 600 IPR027417 -
Bisa11g2549 665 Pfam ATPase family associated with various cellular activities (AAA) 382 514 IPR003959 GO:0005524|GO:0016887
Bisa11g2549 665 Pfam ATPase family associated with various cellular activities (AAA) 112 246 IPR003959 GO:0005524|GO:0016887
Bisa11g2549 665 SMART AAA_5 378 517 IPR003593 GO:0016887
Bisa11g2549 665 SMART AAA_5 108 250 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2549 Bisa-ChrBisa11 50515161 50534635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2549 313 628 Calmodulin-binding Proteins AT3G56690 45.141 1.37e-82 279