Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2530 ATGGAGGAGAGGAAGTTGTTCGTGTGCAAGTTCTGCAACAAGAGGTACACTTGTGGGAAGTCTCTGGGTGGTCACATCAGAACCCACATGACTCAACATTCAAGCACTGGTACAGTCAAGTTCGATGGTGATCGTAATAATAATAATAATACTGATGATGCTGCAAGGAAGAAGAGGAAGAAGAGAGATTTAGGCTCAGATTATGGCCTCAGAGAGAACCCCAGAAAAACATCGAGGTTCGTTCATTCCAATCCCTCTTTTGTTCATCATGAGGAGAAGTTCTGTAAAGAATGCGGGAAAGGATTTCCTTCCTTGAAAGCTCTATGTGGTCACATGGCTTGTCACTCTGAGAAAGAGAAGCAGAAATTGGCAATGATGGATGATACTCAGTCTGATACTGAGACGTGTGTTCCAAAGGGTTCGAAGAGAATGAGGTTCATGGCGCTCAATAGTCATAACAACCTCACTTCTTCTTCTGTGTCAGAGCTTGAGCAGGAAGAAGAAGAAGAGGTGGCTATGTGTTTGATGCTGCTGTCCAAGGACTTGTCTAGCCAAAGGGATCGTTTTGCTTTGCTTACAGAGTCTAATTCTGAGAACAATTCTGTTGTTTTAGAGGCCAAATCGCCCTCTGTTGATACCATAATAGCTGTGAATAGTGGTAAGAATAAGAATAAGAACTCTGTCTGTAATATTGCTTCTTCTCAGCATGTGGATAAGAAGGTGAGAAATGATGATGGCATGATGAAGTTCAAGTTTTCAGATTCTGGGTGTTTCAGATATGGTTCCAAGAAGGTAGATTCAGGTGTTTCGATTGATGTGGTTCTCAAGAATGATGTTTTTAAACGAAAGAAAGTGGGAGATAGATATGGATTTGAGGATCATGATGTCTCTGAATCGAGGAAGAAGATGATGAACAACAGATTCTGCAGAAGCAGGAACACCGAATCCAAGAAATCAATGTCGAAAAAACTGGACTATTCTGAGTTTGATTCTTCGAGAAAGAGAGTCAACCATGATTATCTTAGTCGCAAGAACAAGAAAAACGGCTTTCCTAGTCATGAAAACTACAATAATGGCTCTTATGATTCAGAATCATATCAGAAAAGCACAGAGAGCACTGATTCTGACTCTGATACTGATTCTGATTCTTATCCGTCGTCTTCTTCATCATCTCAGAAGCAAGAGAGCAAGGCCAAGAAGAAACTGAATCCAAATCAAAGAAGGGATCATGAGTGTCCAATCTGCAACAAAACTTTCGGGTCAGGCCAAGCATTAGGAGGCCACAAAAGGTCCCATTTTGTTGGAGGATTTGAAGAGAACAACACTCTGATAATCAAACAGGATTCTCATAATCTTCCTTCTCCTTCTCCTCCTTCTCCTGCTGGTCCTTGTCTGATTGATCTGAATCTACCTCCTCCTGTTGATTAG 1428 0.4139 MEERKLFVCKFCNKRYTCGKSLGGHIRTHMTQHSSTGTVKFDGDRNNNNNTDDAARKKRKKRDLGSDYGLRENPRKTSRFVHSNPSFVHHEEKFCKECGKGFPSLKALCGHMACHSEKEKQKLAMMDDTQSDTETCVPKGSKRMRFMALNSHNNLTSSSVSELEQEEEEEVAMCLMLLSKDLSSQRDRFALLTESNSENNSVVLEAKSPSVDTIIAVNSGKNKNKNSVCNIASSQHVDKKVRNDDGMMKFKFSDSGCFRYGSKKVDSGVSIDVVLKNDVFKRKKVGDRYGFEDHDVSESRKKMMNNRFCRSRNTESKKSMSKKLDYSEFDSSRKRVNHDYLSRKNKKNGFPSHENYNNGSYDSESYQKSTESTDSDSDTDSDSYPSSSSSSQKQESKAKKKLNPNQRRDHECPICNKTFGSGQALGGHKRSHFVGGFEENNTLIIKQDSHNLPSPSPPSPAGPCLIDLNLPPPVD 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2530 475 ProSitePatterns Zinc finger C2H2 type domain signature. 412 432 IPR013087 -
Bisa11g2530 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 410 432 IPR013087 -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 379 393 - -
Bisa11g2530 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Bisa11g2530 475 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 474 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 445 475 - -
Bisa11g2530 475 SUPERFAMILY beta-beta-alpha zinc fingers 94 432 IPR036236 -
Bisa11g2530 475 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 394 414 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 453 475 - -
Bisa11g2530 475 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 31 45 - -
Bisa11g2530 475 Pfam C2H2-type zinc finger 7 31 - -
Bisa11g2530 475 Pfam C2H2-type zinc finger 410 432 - -
Bisa11g2530 475 Pfam C2H2-type zinc finger 95 117 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 351 368 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 31 81 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 46 78 - -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 311 350 - -
Bisa11g2530 475 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Bisa11g2530 475 SMART c2h2final6 410 432 IPR013087 -
Bisa11g2530 475 SMART c2h2final6 93 115 IPR013087 -
Bisa11g2530 475 SMART c2h2final6 7 29 IPR013087 -
Bisa11g2530 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Bisa11g2530 475 MobiDBLite consensus disorder prediction 302 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2530 Bisa-ChrBisa11 50249305 50250732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2530 1 475 C2H2 Transcription Factor Family AT1G26610 37.647 4.82e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa11g2530 zf-C2H2_6 0.00016 CL0361