Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2495 ATGGTGAAAACGAAAGAACACAGTGAAGCAAACGTTGAGTGGGAAGAAGCAGCAGAAATGGCAGCTTCTCTTCTCAGAGCTCGACGATCAGCGAGAAAGCGATTCATCGGGGTTCGCCAGAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGACACAATCCAGAACATTAGAGTGTGGTTAGGCACTTACGATACTGCAGAGGAAGCGGCGATAGCATACGATGAAGCAGCTTGCTTGCTTCGTGGAGCCAACACTCGCAGAAACTTCTGGCCTTCCCAGTGTTCGCCTGCAAATCCTGTTCTTCCCAGAAAGATCGCCAATTTCATCCTTCTCAAGCTCAAAGCCAGAAATAACCATTTTGCCGCCTCTGCTTCTTCGTATTCTTCTTCTACGGTAACTCGTTTTCCCAGTAACCAAACAGAACAAGAACAAGAACCCCTACTTCGGGATTTTCTAGACGCCCCGGAAAATGAGTTTTTCGTAGATGGCGCCAATTTTAAATCTGGTGACGCGACTAGTAATGGTGATTATCACTGTTTAGGTGACGAGGTGAATTTCACCGAAGAGGAGGGTTGCGGGAAGAAATCGAATTCGGATGTTGGAGAAGTAGGGTTTCAGGAGGAAAGTGAGGGTAAATTAGAAGGAAAAAAGATAGTTAATCCCGTCCTTCTTAGGCTCCCCTCTGATTCCGAAGTCACTAATTTTTCGAGTAACCAAACAAGGTTAAAACTCGAACCAGAACCCCATTTTGGTAATTTTTTCTGCGCGCCGGAAAATAGGATATTAATAAATGGCGCCAATTTCACATCAGGAGACACAACTAACTGGGACGAATCAGGGTTTAGCGAAGAAAATTATGGCAGAAAGAAAGTGAATCTGGATGAGGAAATCGAAGAGATTAAGGAGGAAAAAGGAATATTTGATGAGGAATGTGATATAGGGCTCACGGATTTCCAATTTGTGGATAGTGTTGGATCAAATTTTTCTTCTTCTTCTTCTTCGTCTTCTTCGCCATTCGAGATAGCAGAGGAGATGATGGGGCTAATAGAGAAGGAAGAATATGAAGATGGGAATTACGAGCCATTGTTGCTCAGAGAAACTCTGGGGATGAGGTATGAACGCAAATTATCGGCGTGCCTTTACACCTTCGTTGGGGTTTCTGAGTATCTGAGGCTGCAATTTGGGTCAGAAAATGCGAAGGCATTCGAAAATTCTTCGTCTTCTTCGATCCATTTGGGGCTATTTTCTTGA 1254 0.4442 MVKTKEHSEANVEWEEAAEMAASLLRARRSARKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDTAEEAAIAYDEAACLLRGANTRRNFWPSQCSPANPVLPRKIANFILLKLKARNNHFAASASSYSSSTVTRFPSNQTEQEQEPLLRDFLDAPENEFFVDGANFKSGDATSNGDYHCLGDEVNFTEEEGCGKKSNSDVGEVGFQEESEGKLEGKKIVNPVLLRLPSDSEVTNFSSNQTRLKLEPEPHFGNFFCAPENRILINGANFTSGDTTNWDESGFSEENYGRKKVNLDEEIEEIKEEKGIFDEECDIGLTDFQFVDSVGSNFSSSSSSSSSPFEIAEEMMGLIEKEEYEDGNYEPLLLRETLGMRYERKLSACLYTFVGVSEYLRLQFGSENAKAFENSSSSSIHLGLFS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2495 417 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 217 - -
Bisa11g2495 417 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Bisa11g2495 417 Coils Coil 284 311 - -
Bisa11g2495 417 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Bisa11g2495 417 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bisa11g2495 417 FunFam ethylene-responsive transcription factor RAP2-11 33 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2495 Bisa-ChrBisa11 49815214 49816467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2495 32 110 AP2-EREBP Transcription Factor Family AT5G19790 65.823 4.18e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa11g2495 AP2 8.2e-14 CL0081