Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2469 ATGGCAATGGAGATAACAGCTTCTTCAATCTTCCAAGCTTCCATAAGCAAGTCAGTCTCCCTTTCTCTCTTCCCCATTGATATTGTGAGCAAGTTTCACATTCATCTATTTTTGGAGAAGAAGCAAGAGTTAGTTAAGCTTGTCCCGAGGCTTCTTGTCCCAAGCCATGTGAATGGGACTGACATACAGCGTAATTCTGAAACTGCAGAAACTCCATTAGAGATTGACTACCATGATAAAATTATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACATGAATACAGACATTCATTTGTAACTCCCGAGAAGAACCAATGGATCATTTTGGGAGGTCGGTTTTCTATTGCTCCTTGTCTATGCCCACCATGTGCTTGTATTTATTCCACATTGAATGCTCAAGGTGTTGACAATCTCTTTGTCGTCTTCACCAACACTAAGCCGTTGTTGATTAAAGGGATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTGGAGAACATCAATGGCCGCCAAGCAACTTTTGCGAAAAGGAAGAACGGAATCATAAAAAAGGCCACTGAGTTATCAATACTGTGCGATATTGATATCATTTTGCTCATGTTCTCACCAACAGGCAAGCCCTTATTGTGCAGAGGGAGACGCAGCAACATAGAGGAGGTTATTACGAAGTTTGCACAATTAACTCCACAGGAAAGGGCAAAAAGGAAGTTAGAGAGCCTTGAAGCACTGAAGAAAACATTTAGGAAGTTAGACCATGATGTCAATATACAAGAATTTCTGGGTACAAGCCATTGGACTGAGCCTGATAAAATAAACAGTGTGGAACAACTGGGACAGTTGGAAAACTCAATCAGGGAGTCACTTAATCACATTCAAACACGAAAGGAAAATATACAAAAGCAGCAACTTATGAAACTGCAATGCACTAACCAGTTCAATGAGATGCAAATTCCCTACAGAGTGAGTGCTGAGCAACATCTTCAATCCCTATCATGGCTACCTAACAGTGACAGTCAACAGATAGTTTTACCTGAGGACTCAGACTTGCTTCTCCACAAAGACCTAGAGTGCTCTGCAAGCTCTTCTTTTGGGAGTTATGCTAGTTATCTTGGCTCAAGTACAAAGACAGATATGTCTAATTCTGTGCAAGAAAATGGTGTCCTCAGTGAATTGACCAGTACTGCTCCTCTGAGACTACAATTGAGCGGGCAGTTTCAATATGGACTGCCATACAATTTCAATTTACTGAATGACCCAAAGTTTGAACCATCAGCAGAGATGAGCCCACATGAAAACCCAGTGGATTATCACATTAATGGAAGCTTTGAAGCCCCTAGACCTGTATATGACAATAACCACCATGGATGGGCTTCCTCATCAGGGTCTGCTGCTGTTACTTTGTTTGATGAGCATTTGTATGCCCAGGCAAGTTCCCCTCAAGTGCACTTTGGCTTCTCATAG 1476 0.4262 MAMEITASSIFQASISKSVSLSLFPIDIVSKFHIHLFLEKKQELVKLVPRLLVPSHVNGTDIQRNSETAETPLEIDYHDKIIAAAAAAAAAAAAAAAHEYRHSFVTPEKNQWIILGGRFSIAPCLCPPCACIYSTLNAQGVDNLFVVFTNTKPLLIKGMGRVKLKIKRLENINGRQATFAKRKNGIIKKATELSILCDIDIILLMFSPTGKPLLCRGRRSNIEEVITKFAQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTSHWTEPDKINSVEQLGQLENSIRESLNHIQTRKENIQKQQLMKLQCTNQFNEMQIPYRVSAEQHLQSLSWLPNSDSQQIVLPEDSDLLLHKDLECSASSSFGSYASYLGSSTKTDMSNSVQENGVLSELTSTAPLRLQLSGQFQYGLPYNFNLLNDPKFEPSAEMSPHENPVDYHINGSFEAPRPVYDNNHHGWASSSGSAAVTLFDEHLYAQASSPQVHFGFS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2469 491 PANTHER SERUM RESPONSE FACTOR HOMOLOG 161 333 - -
Bisa11g2469 491 PRINTS MADS domain signature 161 181 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 PRINTS MADS domain signature 196 217 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 PRINTS MADS domain signature 181 196 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 SMART madsneu2 159 218 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 FunFam Agamous-like MADS-box protein AGL30 172 254 - -
Bisa11g2469 491 Gene3D - 173 254 IPR036879 GO:0003677|GO:0046983
Bisa11g2469 491 CDD MADS 160 212 - -
Bisa11g2469 491 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 169 212 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 ProSiteProfiles MADS-box domain profile. 159 211 IPR002100 GO:0003677|GO:0046983
Bisa11g2469 491 SUPERFAMILY SRF-like 160 251 IPR036879 GO:0003677|GO:0046983
Bisa11g2469 491 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2469 Bisa-ChrBisa11 49390895 49406500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2469 159 484 Type I MADS-box Gene Family AT2G03060 47.120 4.81e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa11g2469 SRF-TF 5.1e-18 No_clan