Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2448 ATGGGTATCAAAATCTCCATCTCTTTTCCCATAAAATATTTGGATCTTCGGACCCGGACTCATTCGAGAGCAAACTTTAAAACACAAGCACTCTTTTTGACAGACAGAATGGAAACTGATTCTAAAACAAAAACGGAAATCCATGGAACCGGCCCTGTAGGCTGTATTGAACTTTCCCAGAAAAGTCTTGGTAAGAAAATCAAGTCTTCGTCTTTCTCTCTCATTCTCTGTGCCTCTTTCTCCGAATCTCCGCTCAAGCTTTCCATCCCCTTTTACGGGGATTTAGGTTACGGATCAATGAGCGATCATTTGGTGCTGTATGTAGATCGTCTGGTACGCCCTGTGACCGCTGAGCCGGTGACGCAGCAGAAGCCGGGTCAGTTGCCGTCCGACCCGTCTATGGCGGGTGAGTCCGTGGACGCGGCGGGCCCCTCTGGCTCGGCACCGCCGGTGGACGATGACGCTAGGTCGGAGCATGAAGAGGGTGGTGGTGAGGATGAGCCGCTGATCCCGAACGCGGAGTGTCGCATTTGTCAGGAGGAAGACACCATTAACAATTTAGAGACGCCTTGCGCCTGCAGCGGCAGTCTGAAGTATGCTCATCGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGCGAGATCTGTCATAAGCCATATCAACCTGGTTATATTGCCCCACCTCCTCGCCCTCATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCTTTGGACTTGCGTGATCCACGACTCTTGGCAATTGCAGAGGCTGAACGACAATTAATGGATGCTGAATATGATGAGTATGCTGCCTCAAATGCCAGTGGAGCTGCCTTTTGCCGTTCAGCTGCTTTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCACAGATGGTGATGCAGATGATGATCCGTCAACATTTTTCTCTATATTCTTACTTCGGGCAGCTGGATTTCTCTTACCTTGCTATATTATGGCTTGGGCAATCAGTATCTTGCAACGTCGGAGGCAAAGACAAGAGGCTGCAGCACTGGCAGCAACCCAAGTTGCTTTTGTTCTGCAATCTGGGCAGCATAGTGGCCTGCAATTCGCCATGGCTCCTGGGCCCGCAGCGAATACACACCAGGAACATATTGTTTAG 1185 0.4962 MGIKISISFPIKYLDLRTRTHSRANFKTQALFLTDRMETDSKTKTEIHGTGPVGCIELSQKSLGKKIKSSSFSLILCASFSESPLKLSIPFYGDLGYGSMSDHLVLYVDRLVRPVTAEPVTQQKPGQLPSDPSMAGESVDAAGPSGSAPPVDDDARSEHEEGGGEDEPLIPNAECRICQEEDTINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHKPYQPGYIAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQLMDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDADDDPSTFFSIFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHSGLQFAMAPGPAANTHQEHIV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2448 394 CDD RING_CH-C4HC3_MARCH 175 221 - -
Bisa11g2448 394 MobiDBLite consensus disorder prediction 152 166 - -
Bisa11g2448 394 MobiDBLite consensus disorder prediction 118 170 - -
Bisa11g2448 394 Pfam Protein of unknown function (DUF3675) 226 344 IPR022143 -
Bisa11g2448 394 FunFam RING/FYVE/PHD zinc finger protein 163 231 - -
Bisa11g2448 394 SUPERFAMILY RING/U-box 172 225 - -
Bisa11g2448 394 Pfam RING-variant domain 175 220 IPR011016 GO:0008270
Bisa11g2448 394 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 100 354 IPR033275 -
Bisa11g2448 394 SMART ringv_2 174 221 IPR011016 GO:0008270
Bisa11g2448 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 228 IPR013083 -
Bisa11g2448 394 ProSiteProfiles Zinc finger RING-CH-type profile. 167 227 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2448 Bisa-ChrBisa11 49158048 49166190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2448 171 221 C3H Transcription Factor Family AT2G37950 42.593 1.95e-07 49.7