Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa11g2431 | ATGCGAAAATCTAAGCTGAATATTGTTGCTGGAGGATCTTCTAGTGACATTCTAAGGGGGGTTTCCTGTGGTTTTATGACTTTAAAGTCGTTTTGGATTGAGTTCATGAGCTGGGGCTCATGGCTACGAGTGTTTCAATTTTCATGGGGAGAGCTTGGACATTGGCTTATGGTATCTATTTCATTTTGGGCTGTTGTTCAAATGGGTATTGGGTCCACTCCTTGGAAGCACCAGATATTGCAACTTGAATGGCTGATCCTCAGAGAATTACTACTGTTGAGAAGGATATCGAGCAGGCAACATTTCAGCGGTACCCTAGGCCTGAAAAGGAATATCAATCATTTTCTCTTATCTGCCATGATAGTGCCTGTATATGGGCAGATATGTAAGGACAAGGAAGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCAAGGTAACATTCGCAAGGGAGACAGTTTCTATCCTGACTCTTGCACACGAGGGACACCATCACTTACATTATTGGACCCAGGACATACTAAAAAAGTTCCTTCTGACCGTAGTTCACAGATTGGATTGGGGAAGGCATTCTCTCAAATAATTTCATATACTGCTGCTGACAAGAATTTAAATCGAGCTGTTTCAGTTGCAAATACCTCCTCCTCTGGGTCTGTGGACAACTCTAACTATCGAAATTCTACGGTTGATACATTTCGAGTTAGTGTATCAAGTGCAGTGAGTTCATCCAGCCAGGGTTCTAACACTGAAGATTTTGGTGCTATATGTGATGTTTTCCTTTGGGGAGAAGGTACTGGTGATGGATTGCTTGGTGGTGGTGCGCATAAAGTTGGAACTTTATCTAGTTCTGATATGGATGCATTTCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCACAGTATTGCTTGTGGTTACAAACATGCTGTTCTAGTTACCAGGCAAGGAGAGATATTTAGTTGGGGGGAGGAATCAGGAGGTAGGCTTGGGCATGGTGTAGAGGCAGATGTTTCCCACCCTAAGCTCATTGACACTCTCAGTGGCATGAATGTTGAATCAGTAGCTTGTGGGGAATATCATACCTGCGCTGTCACATTTTCTGGGGATCTTTATACTTGGGGTGATGGTGATCACAATTCTGGTTTACTTGGGCATGGAAATGAAGCCAGTCATTGGATTCCTAAGAAATTAAGTGGTAACATGGAGGGTATGCATGTATCATATGTGTCATGTGGACCTTGGCATACTGCTATTTTGACATCAGCTGGTCAATTGTTTACATTTGGGGATGGATCTTTTGGTGCCTTGGGCCATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTACAAACTTTGAAAAGGTTAAGAACAATTAGAGTTTCCTGCAGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATGAATGAATCTACAGAAGCTGCTGAGCTTTCTCCTATTGGAAAACTGTTCACCTGGGGGGATGGAGATACAGGCCAACTTGGACATGGTGATGAGGAACCTAGACTAGTTCCTCAGTGTGTAACTACATTGGGTAATGAAAATATTTGCAGAGTTGCTTGTGGCCACCATCTTACAATTGCTTTGACAACTTCTGGACTTGTATATACAATGGGCAGTACTGCTTATGGACAACTTGGCAATTCTGCGGCTGCTGGAAAAATCCCTACATGTGTAGAAAGTAAAATTTCTGACAGTTTTGTGGAAGATATTGCGTGTGGTTCCTATCACGTTGCAGTCCTGACTTCCAAGAAAGAGGTTTACACCTGGGGAAAGGGTCTGAATGGGCAGTTAGGTCATGGAGACAATGATCACCGAAGTGATCCTACACTTGTTGAGTTCCTAAAAGATAGACAAGTGAAGGGTGTTGCATGTGGTTCAAACTTCACTGCTGTTGTATGTCTTCATAAAGGGGTATCTAGTGCTGATCATTCTGTGTGCTCTGGTTGTAGTAATCCTTTTGGATTCATAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAAAGTATGCAGCAGCAAGAAATCCACTAAAGCTTCCCTTGCTCCAGACGCCAACAAGCCGTACAGGGTTTGTGATGATTGCTATTCTAAACTTAAGAAGGCCACAGTATCTGTCTCCTTGATAAAAACTCTTACCTCGAAAAGTAGAGGTATATACTACACTAGATCTGATAAATTAAGGGAAAGACTATCAAGGCTGTCATCTTTTGGTTCCACTTTTCCAGCGGAAAGCAAGAACTCAAAGCTTCCAGAATTACATGGTAGCCATGTTTTTCCATCTTTGAGTGGAAAGCTACAGTTGGCACGTTTCAGTTTTTCAAAAGCATCAAATTTTCTTGCTGGAGCATCAAGTAAGCCATGTTCAGCTTCTATGCCTGGAAGTAGAATGACATCAATAGCATCATCTCCCATTTCAACCAATTCAAGCCCACTACTGGGCTATGAAGATATAAATGATGATTTAAAGTATAGATACGACATTCTAAGTCAACAAGTTACAAGTTTACGGGCACAGGTTGAAGATCTTACTCATAAATCCAAGCAGCTTGAAGCTGACCTTGAGAGGAAATCAAAGCAATTGAACGAGGTGACTGCAGTAGCCGCAGATGAAACTGAAAAGTTTAATTCTGCCAAAAAGGTTTTAAAGTCATTAACTGCCCAGCTGAAGGAAATGGTGCAAAGACTGCCAGAAGGAGACGATGCTGACTTCGATGTTGGAACTACTACTACTACTAATCATTCCTCAGAAGAGAGCCATATAACAAACTGTATCACTCCTGAAATTGCATCCCTGAGCAATGCATCAAATACGGTATTGCCAAATGGTACCAAAACACAAAGTGAAAAGGCGGAGAGGGTGGTCCAAGCTGAACCAGGTGTATACATAACTTTGTCCTCTTTGCCTGGTGGTGGTAATGAGCTTAAACGCGTTCGCTTCAGTCGAAGACATTTCTCGGAACAGCAAGCTCAGAAGTGGTGGGCCGAAAATGAAGCCAATGTATTGGAGAGGCACGATGTGGTTTCTTCCTAG | 3078 | 0.423 | MRKSKLNIVAGGSSSDILRGVSCGFMTLKSFWIEFMSWGSWLRVFQFSWGELGHWLMVSISFWAVVQMGIGSTPWKHQILQLEWLILRELLLLRRISSRQHFSGTLGLKRNINHFLLSAMIVPVYGQICKDKEEAEIWFVGLKALVTQGNIRKGDSFYPDSCTRGTPSLTLLDPGHTKKVPSDRSSQIGLGKAFSQIISYTAADKNLNRAVSVANTSSSGSVDNSNYRNSTVDTFRVSVSSAVSSSSQGSNTEDFGAICDVFLWGEGTGDGLLGGGAHKVGTLSSSDMDAFLPKALESKVVLDVHSIACGYKHAVLVTRQGEIFSWGEESGGRLGHGVEADVSHPKLIDTLSGMNVESVACGEYHTCAVTFSGDLYTWGDGDHNSGLLGHGNEASHWIPKKLSGNMEGMHVSYVSCGPWHTAILTSAGQLFTFGDGSFGALGHGDHSSTNIPREVQTLKRLRTIRVSCSVWHTAAVVEVMNESTEAAELSPIGKLFTWGDGDTGQLGHGDEEPRLVPQCVTTLGNENICRVACGHHLTIALTTSGLVYTMGSTAYGQLGNSAAAGKIPTCVESKISDSFVEDIACGSYHVAVLTSKKEVYTWGKGLNGQLGHGDNDHRSDPTLVEFLKDRQVKGVACGSNFTAVVCLHKGVSSADHSVCSGCSNPFGFIRKRHNCYNCGLVFCKVCSSKKSTKASLAPDANKPYRVCDDCYSKLKKATVSVSLIKTLTSKSRGIYYTRSDKLRERLSRLSSFGSTFPAESKNSKLPELHGSHVFPSLSGKLQLARFSFSKASNFLAGASSKPCSASMPGSRMTSIASSPISTNSSPLLGYEDINDDLKYRYDILSQQVTSLRAQVEDLTHKSKQLEADLERKSKQLNEVTAVAADETEKFNSAKKVLKSLTAQLKEMVQRLPEGDDADFDVGTTTTTNHSSEESHITNCITPEIASLSNASNTVLPNGTKTQSEKAERVVQAEPGVYITLSSLPGGGNELKRVRFSRRHFSEQQAQKWWAENEANVLERHDVVSS | 1025 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 428 | 479 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 966 | 1020 | IPR013591 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 493 | 544 | IPR000408 | - | |
| Bisa11g2431 | 1025 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 307 | 317 | IPR000408 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 653 | 715 | IPR017455 | - | |
| Bisa11g2431 | 1025 | CDD | FYVE_like_SF | 659 | 711 | - | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 597 | 648 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 411 | 424 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 430 | 446 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 493 | 509 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 374 | 390 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 547 | 561 | IPR000408 | - | |
| Bisa11g2431 | 1025 | PRINTS | Chromosome condensation regulator RCC1 signature | 531 | 547 | IPR000408 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 321 | 372 | IPR000408 | - | |
| Bisa11g2431 | 1025 | SUPERFAMILY | Myosin rod fragments | 830 | 917 | - | - | |
| Bisa11g2431 | 1025 | SUPERFAMILY | RCC1/BLIP-II | 259 | 649 | IPR009091 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 545 | 596 | IPR000408 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 259 | 320 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | FYVE zinc finger | 654 | 715 | IPR000306 | GO:0046872 | |
| Bisa11g2431 | 1025 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 373 | 427 | IPR000408 | - | |
| Bisa11g2431 | 1025 | SMART | fyve_4 | 647 | 716 | IPR000306 | GO:0046872 | |
| Bisa11g2431 | 1025 | Gene3D | - | 485 | 662 | IPR009091 | - | |
| Bisa11g2431 | 1025 | ProSiteProfiles | BRX domain profile. | 966 | 1021 | IPR013591 | - | |
| Bisa11g2431 | 1025 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 230 | 481 | - | - | |
| Bisa11g2431 | 1025 | Pfam | Transcription factor BRX N-terminal domain | 886 | 912 | IPR027988 | - | |
| Bisa11g2431 | 1025 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 120 | 903 | - | - | |
| Bisa11g2431 | 1025 | Coils | Coil | 841 | 882 | - | - | |
| Bisa11g2431 | 1025 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 663 | 721 | IPR013083 | - | |
| Bisa11g2431 | 1025 | Gene3D | - | 191 | 383 | IPR009091 | - | |
| Bisa11g2431 | 1025 | Gene3D | - | 384 | 484 | IPR009091 | - | |
| Bisa11g2431 | 1025 | Coils | Coil | 890 | 910 | - | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 493 | 541 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 544 | 593 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 424 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 321 | 369 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 598 | 645 | IPR000408 | - | |
| Bisa11g2431 | 1025 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 428 | 476 | IPR000408 | - | |
| Bisa11g2431 | 1025 | SUPERFAMILY | FYVE/PHD zinc finger | 652 | 718 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa11g2431 | Bisa-ChrBisa11 | 48961678 | 48971350 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa11g2431 | 967 | 1022 | Major Intrinsic Protein MIP | AT1G31880 | 55.357 | 3.60e-14 | 73.6 |