LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g2420	ATGATAAGTTTTATAGTCAATCTTATTCAGTCAAAAAGTCATCCCAAATATCTCCTAATTTTGAGATATAATCTGGTTTTCCTGGCCATGAACCTCATTGATGGAAGACTGGTAGAATTGCTCAGCCAGTACGGGGACGTCTTCCGCAATGGACGGTTCAGATGGGCCATTGGTTGGTTAAATCCAGAAAGGCACATCAATGAACAAGTGAATTTGGACTGCATTAGCGTCAAAATCAGGCCCTCAGTTTCAGATGTTCAATCAACTGATATGGACTCAACAGAAAGTCTGGAAGCCGTTAAATCAGATAATAACTTGTGGCCATCTCTGTTTATGGCTGGCTTCGCTAATTTGGGTGCATGTGTTGCAGATTTAACCTCTTTCGTAGGTCCTCTATGTTTCTTAACCTTCCCTTTCAACTGTGGAAAAAGAGGACGAAGAAACAACACTAAAGGGAAAATTAATAGTGAAGTTGAAGGGATAAAGGTTGATGGGAAAGAGGTTGGTCCTGATGCACGATGCCTGTTGTCTGTCAAACCTTTGAGCATCAGCAACCTTCTCTTCTCTTCTCTTCTCACTGATCAACATGGCAATCGGCTCTTGAAGAGATTTGTGATATATAGGTCAAGAGAAGAGACTATCAATGAGATGGCTTTCTTCCCTGCAAATTTCATGCTTCAAACCCCTCACCCAGAAGACCATCATCATCAGCCTCCTCCTTCTCTCAACTCACTCCTGCCCTCCTGTGCTCCTCAAGATTATCATCATGGGGGAGCATCTTTTTTAGGTAAGAGATGCATGTCATTTTCAGGAATTGAACTTGGTGGTGAAGAAGCTAATGGTGAGGAAGACTTGTCCGATGATGGGTCTCAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGCTTGGAAATAAGCTTGAGCCAGAGAGGAAAATGCAGTTGGCTAGGGCTCTTGGATTGCAGCCCAGACAGATCGCCATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGCTTGAGAAAGACTATGATCTTCTCAAAAGACAATATGAAGCTCTCAAGGCGGAAAATGAAGCGCTTCAAGCTCAGAACCAAAAACTCCAGGCGGAGATATTGGCACTGAAAAGCAGAGAACCAACTGAATCAATCAACCTCAATAAAGAAACAGAGGGATCTTGCAGCAACAGAAGTGAGAACAGCTCAGAGATCAAGTTTGATATCACAAGAACACCAGCCATTGACAGTCCTGATCTATCCACACAACAAACCAGCATAGCCCTCTTTCCACCATCTTCTTCTGCTTCTGCAAGGCCTTCTTCAGGAGGGGTGGCTCAGCTCTTGCAAGCTTCTTCAAGGCCAGAGTTTCAGTGCCAGAAGGTTGATCACATGGTCAAAGATGAGAGTTTGAGCAATATGTTTTGTGCGATTGATGATCAGTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA	1518	0.442	MISFIVNLIQSKSHPKYLLILRYNLVFLAMNLIDGRLVELLSQYGDVFRNGRFRWAIGWLNPERHINEQVNLDCISVKIRPSVSDVQSTDMDSTESLEAVKSDNNLWPSLFMAGFANLGACVADLTSFVGPLCFLTFPFNCGKRGRRNNTKGKINSEVEGIKVDGKEVGPDARCLLSVKPLSISNLLFSSLLTDQHGNRLLKRFVIYRSREETINEMAFFPANFMLQTPHPEDHHHQPPPSLNSLLPSCAPQDYHHGGASFLGKRCMSFSGIELGGEEANGEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEALKAENEALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSEIKFDITRTPAIDSPDLSTQQTSIALFPPSSSASARPSSGGVAQLLQASSRPEFQCQKVDHMVKDESLSNMFCAIDDQSGFWPWLEQQHFN	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g2420	505	Pfam	Homeodomain	295	348	IPR001356	GO:0003677
	Bisa11g2420	505	MobiDBLite	consensus disorder prediction	395	414	-	-
	Bisa11g2420	505	SUPERFAMILY	Homeodomain-like	285	352	IPR009057	-
	Bisa11g2420	505	Pfam	Homeobox associated leucine zipper	350	390	IPR003106	GO:0006355\|GO:0043565
	Bisa11g2420	505	Gene3D	-	287	356	-	-
	Bisa11g2420	505	MobiDBLite	consensus disorder prediction	277	298	-	-
	Bisa11g2420	505	ProSitePatterns	'Homeobox' domain signature.	325	348	IPR017970	GO:0000981\|GO:0006355
	Bisa11g2420	505	ProSiteProfiles	'Homeobox' domain profile.	290	350	IPR001356	GO:0003677
	Bisa11g2420	505	Coils	Coil	342	390	-	-
	Bisa11g2420	505	FunFam	Homeobox-leucine zipper protein ATHB-13	287	354	-	-
	Bisa11g2420	505	CDD	homeodomain	295	351	IPR001356	GO:0003677
	Bisa11g2420	505	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	283	432	IPR045224	GO:0003700
	Bisa11g2420	505	SMART	HOX_1	293	354	IPR001356	GO:0003677
	Bisa11g2420	505	MobiDBLite	consensus disorder prediction	441	460	-	-
	Bisa11g2420	505	PRINTS	Lambda-repressor HTH signature	321	330	IPR000047	GO:0003677
	Bisa11g2420	505	PRINTS	Lambda-repressor HTH signature	330	346	IPR000047	GO:0003677
	Bisa11g2420	505	MobiDBLite	consensus disorder prediction	398	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g2420	Bisa-ChrBisa11	48795329	48806868	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g2420	215	505	Homeobox Transcription Factor Family	AT1G69780	63.455	2.13e-116	343

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Bisa11g2420		Homeodomain	3.3e-15	CL0123