Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2417 ATGCAAGTCCTGAAGAAGCAGCAGCATCAGCAAGGCAATGAAGAATCCAAGAAGAAGGAGCGTCACATTGTCTCTTGGACTCAAGAGGAGGATGACATACTAAGAGAGCAGATTAGTATCAATGGAACAGACAATTGGACAATTATTGCATCAAAGTTCAAGGATAAAACGACAAGACAGTGCAGGCGAAGATGGTACACGTACTTAAATTCTGATTTCAAGAAAGGAGGATGGTCACCTGAGGAAGACATGCTGTTATGTGAGGCTCAGAAGATATTTGGCAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACTGACAACGCTGTGAAAAACCGCTTCACCACACTGTGCAAAAAGAGAGCGAAATATGAAGCCTTGGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAAAGGACTGCTTTCCAACATATTTACAATACAGATGCAACATCAGAGGCTGTAGCACCTAGTAAGAAGATGAGGGCCCATATCCCTGATGCTGCAGAAAAAATAAACTTCGGAGACGGATCGCATAAACAATGTGGAACACCAATCAGTCAGCAGCCAAGAGCACCATTTGCAGTATTAGCTCAAAATTTCCATGATAACAACTTGGCAGACCAACGTCATGTCTGCAATGTCAAGTTCATAGGCTATGCTCAGAATAACAAGACTCAAGGAACCTTCCTGAAAAAGGATGATCCAAAGATAAGCATGTTGATGCAGCAAGCAGAATTACTAAGTTCACTAGCAACAAAAGTTAATACAGAGAACATGGACCAGAGTTTTGAGAATGCATGGAAGGTTCTTAAAGAGTTTCTCAACCGAACCAAAGAATCAGATCTTCCAAAATATAAGATCCCAGATTTACAGCTCGTAGATCTCAAACATATGGTGGAGGACTTACAGAATGGTAACAAGGGAAGCCAGCCATGTTGGAGGCAACCAGAGCTACATGAAGACTCTCCCGGCAGCTCTGAGTACAGTACAGGATCAACTCTCCTGCCCCTATCAGCCAGTGATAATATGAAACATGCAGTGCATGGGGATAATGGAACTGAAAGGAAATATACTGAAATTGGAAATAAAAAAGGAGTTACTGATTGTGAGAAACATGTTCTCTCTGCTTCAACTGTGGATCAACATATCTTGCAATCTTGTGAAGAACAGATAAACAATGATGCCATTGTTTCTGACTCATCCAGTACAGAGTTCAGTTCCCCTCTTCAGGTTACCCCTATTTTCAGATCCTTGGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTTCTGATGAAAACACTCGGAATGGAATCCCCATCCCTCAACCTAAGTGCCAAAGCCTCACAACCACCACACTGTAAAAGAGCCCTATTGCAAAGTCTATAA 1419 0.42 MQVLKKQQHQQGNEESKKKERHIVSWTQEEDDILREQISINGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKRAKYEALAKENSTSYINSNNKRTAFQHIYNTDATSEAVAPSKKMRAHIPDAAEKINFGDGSHKQCGTPISQQPRAPFAVLAQNFHDNNLADQRHVCNVKFIGYAQNNKTQGTFLKKDDPKISMLMQQAELLSSLATKVNTENMDQSFENAWKVLKEFLNRTKESDLPKYKIPDLQLVDLKHMVEDLQNGNKGSQPCWRQPELHEDSPGSSEYSTGSTLLPLSASDNMKHAVHGDNGTERKYTEIGNKKGVTDCEKHVLSASTVDQHILQSCEEQINNDAIVSDSSSTEFSSPLQVTPIFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNLSAKASQPPHCKRALLQSL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2417 472 CDD SANT 78 119 IPR001005 -
Bisa11g2417 472 MobiDBLite consensus disorder prediction 310 338 - -
Bisa11g2417 472 Gene3D - 77 149 - -
Bisa11g2417 472 FunFam Transcription factor MYB124 18 74 - -
Bisa11g2417 472 SMART sant 74 122 IPR001005 -
Bisa11g2417 472 SMART sant 22 71 IPR001005 -
Bisa11g2417 472 CDD SANT 25 69 IPR001005 -
Bisa11g2417 472 FunFam Transcription factor MYB124 77 145 - -
Bisa11g2417 472 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
Bisa11g2417 472 MobiDBLite consensus disorder prediction 1 21 - -
Bisa11g2417 472 PANTHER MYB PROTEIN-RELATED 25 158 - -
Bisa11g2417 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 73 IPR017930 -
Bisa11g2417 472 Gene3D - 24 72 - -
Bisa11g2417 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Bisa11g2417 472 ProSiteProfiles Myb-like domain profile. 25 69 IPR001005 -
Bisa11g2417 472 Pfam Myb-like DNA-binding domain 26 86 - -
Bisa11g2417 472 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2417 Bisa-ChrBisa11 48755851 48761071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2417 64 472 MYB Transcription Factor Family AT1G14350 53.140 2.87e-132 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa11g2417 Myb_DNA-bind_6 5.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2417 11 48755851 48761071 Bisa11g2417 11 48755851 48761071 ECH