Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2408 ATGATTGCCAACCCAGTTGAGCAGAATTTGTCTAATATAACCAGAACCCCTCTGAGCCATATGATTTGGTATAACTTGAAGTTTGAAATGCAATGTAATCTTCCACTTTGCTTGAATGTAGGTGTTCAAAACAAGCTCACTAACGTGGATGAAAGCATCTCTATCCCCGTTACAAAAGCAGAGTTAGCTGTTCTCAACTCTGTTATCAAGATTATCATACCTCACTTTTTGGGTTGGCATGCTTTTGCAAATTCCATAAAGCCAGAGGATCTGAGCCGAAAGAAGACGAAGAAGAAGAATTGTTGA 306 0.3922 MIANPVEQNLSNITRTPLSHMIWYNLKFEMQCNLPLCLNVGVQNKLTNVDESISIPVTKAELAVLNSVIKIIIPHFLGWHAFANSIKPEDLSRKKTKKKNC 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2408 101 Gene3D Transcriptional Coactivator Pc4; Chain A 20 98 IPR009044 GO:0003677|GO:0006355
Bisa11g2408 101 Pfam Whirly transcription factor 36 68 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bisa11g2408 101 SUPERFAMILY ssDNA-binding transcriptional regulator domain 36 97 IPR009044 GO:0003677|GO:0006355
Bisa11g2408 101 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 37 98 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2408 Bisa-ChrBisa11 48649730 48652560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2408 38 93 Whirly Transcription Factor Family AT1G14410 64.286 4.31e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Bisa11g2408 Whirly 1.8e-05 CL0609